genome.fa.s7749.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007749.1 Hibiscus syriacus cultivar Beakdansim tig00110015_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1787532

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 889 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1698187--1698253	20	3.4	20	81	2	73	38	23	22	14	1.92
1698242--1698299	14	3.9	14	79	16	71	48	25	17	8	1.75
1698226--1698316	32	2.8	33	94	3	166	47	23	18	10	1.80
1698187--1698321	19	7.6	19	71	19	85	42	23	20	12	1.86
1698333--1698390	14	3.9	14	79	16	71	8	17	25	48	1.75
1698328--1698406	32	2.4	33	95	2	142	10	18	24	46	1.80
1698347--1698464	20	6.4	19	77	11	95	13	20	24	41	1.88
1700432--1700547	33	3.4	33	81	11	133	42	18	22	17	1.89
1700461--1700525	19	3.4	19	97	0	121	46	15	21	16	1.84
1700566--1700623	20	2.9	20	89	0	89	18	22	20	37	1.94
1701684--1701737	24	2.2	24	90	0	81	24	16	20	38	1.92
1701912--1701936	13	1.9	13	100	0	50	76	0	24	0	0.80
1702408--1702573	19	8.8	19	81	10	180	44	21	21	12	1.85
1702408--1702573	39	4.4	38	78	10	153	44	21	21	12	1.85
1702578--1702640	19	3.3	19	80	8	65	11	14	23	50	1.74
1702585--1702643	19	3.1	18	83	9	73	11	15	22	50	1.76
1703217--1703292	21	3.7	21	80	3	100	15	25	18	40	1.90
1703156--1703290	41	3.3	41	83	4	139	19	21	21	37	1.94
1703217--1703309	20	4.6	20	77	4	87	17	23	18	40	1.90
1703217--1703309	41	2.3	41	98	0	177	17	23	18	40	1.90
1714805--1714844	17	2.3	18	86	8	64	22	25	25	27	2.00
1715812--1715887	35	2.2	35	90	0	116	40	22	1	35	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1716284--1716531	130	1.9	130	93	0	424	36	15	12	35	1.86
1716458--1716504	23	2.1	21	84	7	58	31	14	19	34	1.92
1716298--1716562	130	2.0	129	83	4	327	39	13	13	33	1.83
1716860--1716921	27	2.3	27	82	2	70	45	1	3	50	1.27
1717001--1717034	16	2.0	18	88	11	54	64	5	2	26	1.30
1723026--1723055	2	15.0	2	100	0	60	50	0	0	50	1.00
1723636--1723705	35	2.0	35	100	0	140	25	8	22	42	1.82
1730690--1730834	75	1.9	75	83	2	184	42	9	17	29	1.81
1731895--1731934	5	8.0	5	100	0	80	40	20	40	0	1.52
1740980--1741055	3	25.3	3	100	0	152	67	0	32	0	0.91
1745170--1745215	12	3.6	12	81	16	56	45	17	19	17	1.85
1745176--1745216	12	3.1	13	80	19	57	46	14	17	21	1.84
1747508--1747547	21	1.9	21	94	0	71	30	15	7	47	1.72
1747542--1747640	33	3.0	33	94	1	164	32	7	15	45	1.73
1747626--1747680	13	4.2	13	75	13	58	34	3	12	49	1.59
1747875--1747931	21	2.7	21	91	0	96	19	26	26	28	1.99
1748114--1748146	17	1.9	17	93	0	57	42	12	9	36	1.74
1758133--1758168	2	18.0	2	100	0	72	0	50	0	50	1.00
1761522--1761553	10	3.2	10	95	0	55	34	0	0	65	0.93
1762498--1762545	20	2.4	20	100	0	96	20	35	25	18	1.95
1762727--1762755	15	1.9	15	100	0	58	62	0	37	0	0.96
1762998--1763107	56	2.0	55	82	12	136	33	0	14	51	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1766733--1766789	26	2.2	25	78	9	60	26	0	1	71	0.95
1775335--1775428	24	4.0	24	87	5	120	22	22	24	30	1.99
1775335--1775428	47	2.0	48	83	6	120	22	22	24	30	1.99
1779405--1779457	26	2.0	26	96	0	97	39	11	22	26	1.88
1783778--1783865	31	2.8	32	84	3	97	20	23	29	26	1.99

Tables:   1   2   3   4   5   6   7   8

The End!