genome.fa.s7751.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007751.1 Hibiscus syriacus cultivar Beakdansim tig00110017_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1434969

Tables:   1   2   3   4   5   6   

This is table  2  of  6  ( 636 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
253510--253625	35	3.2	36	89	4	173	43	19	4	31	1.71
253557--253617	21	3.2	21	65	29	64	42	21	3	32	1.69
255709--255740	15	2.1	15	94	0	55	6	25	15	53	1.65
256934--257034	35	2.9	36	91	4	170	44	17	4	32	1.71
256973--257032	21	3.2	21	65	30	62	43	20	5	31	1.73
258184--258240	2	28.5	2	100	0	114	50	0	0	49	1.00
262932--262974	21	2.0	21	86	8	61	2	34	18	44	1.63
266007--266075	33	2.1	33	100	0	138	37	14	20	27	1.91
266590--266632	5	8.6	5	92	0	59	37	37	4	20	1.74
268373--268514	13	11.1	13	68	23	72	37	3	2	56	1.31
268391--268501	10	10.9	10	69	15	50	35	4	2	57	1.33
286399--286460	28	2.2	28	82	5	81	27	8	3	61	1.40
294467--294535	28	2.4	29	81	13	72	50	11	2	34	1.54
322211--322261	21	2.4	21	83	0	66	21	25	31	21	1.98
322223--322385	80	2.0	80	95	0	290	34	26	22	15	1.94
326129--326153	13	1.9	13	100	0	50	36	8	24	32	1.84
335631--335673	18	2.4	19	84	7	54	18	6	4	69	1.29
337975--338038	30	2.3	27	78	10	76	46	1	0	51	1.10
337975--338040	28	2.4	25	76	18	69	46	1	0	51	1.10
338065--338132	21	3.2	20	75	6	73	44	0	1	54	1.09
338071--338160	14	7.1	13	68	14	53	46	0	1	52	1.07
338096--338173	26	3.1	25	73	15	72	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
338135--338182	21	2.3	21	78	7	53	52	0	0	47	1.00
338151--338203	26	1.9	29	88	11	85	52	0	0	47	1.00
338231--338305	25	3.0	25	73	13	64	46	1	1	50	1.18
338280--338354	22	3.5	23	71	15	70	49	2	1	46	1.24
338263--338361	42	2.5	40	76	18	114	45	2	1	51	1.19
338438--338492	20	2.8	20	78	13	69	52	1	0	45	1.11
338461--338501	21	2.0	20	90	4	64	51	0	0	48	1.00
338465--338510	24	1.9	24	86	8	67	45	2	2	50	1.26
341156--341219	26	2.5	25	73	12	58	37	3	4	54	1.37
343379--343445	30	2.2	31	86	2	91	25	5	7	61	1.46
343379--343458	31	2.6	30	84	2	97	22	7	6	63	1.43
343578--343645	26	2.6	26	100	0	136	52	32	2	11	1.53
352631--352709	31	2.5	31	87	0	122	53	16	10	20	1.71
354726--354790	3	21.7	3	75	12	62	30	1	3	64	1.18
355280--355314	8	4.4	8	96	0	61	8	17	11	62	1.52
357347--357391	21	2.1	21	87	0	63	31	28	24	15	1.96
357960--357994	18	1.9	18	88	11	54	54	5	17	22	1.64
358051--358094	22	2.0	22	86	4	63	45	0	22	31	1.53
358858--359307	149	3.0	148	98	0	850	27	17	20	34	1.95
359286--359330	23	2.0	23	86	0	63	20	24	28	26	1.99
366593--366625	16	2.0	17	88	5	50	75	6	9	9	1.18
367504--367535	2	16.5	2	93	6	57	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
367502--367564	17	4.0	15	73	15	56	44	0	0	55	0.99
370754--370782	15	2.0	15	93	6	51	31	0	0	68	0.89
371199--371230	16	1.9	17	93	6	57	37	21	12	28	1.90
374271--374315	18	2.5	18	92	0	72	62	15	11	11	1.55
379051--379094	21	2.1	21	87	4	63	9	22	9	59	1.56
379444--379484	10	4.0	11	81	12	52	26	0	0	73	0.84
379758--379796	19	2.0	20	90	5	62	58	0	0	41	0.98
379851--379909	20	2.9	22	69	25	65	45	1	3	49	1.28
379841--379937	40	2.5	37	78	16	108	49	2	2	46	1.25
379914--379974	17	3.3	17	77	20	68	55	1	1	40	1.19
379928--379979	22	2.4	22	80	6	61	51	1	1	44	1.23
381504--381568	9	7.7	9	68	25	52	47	15	12	24	1.79
381493--381571	25	3.2	25	100	0	158	48	16	12	22	1.80
393869--393940	31	2.3	32	85	2	92	45	6	22	25	1.77
397205--397240	4	9.0	4	100	0	72	75	0	0	25	0.81
406539--406621	29	2.8	29	92	1	139	43	9	14	32	1.78
409965--409994	15	2.0	15	93	0	51	20	0	23	56	1.42
411283--411365	29	2.8	29	92	1	139	43	9	14	32	1.78
412284--412333	19	2.6	19	90	0	73	28	28	20	24	1.99
412329--412388	30	2.0	30	83	6	77	18	21	31	28	1.97
412811--412841	2	15.5	2	93	0	53	45	0	0	54	0.99
422046--422104	2	29.5	2	100	0	118	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
422266--422307	18	2.4	17	88	4	66	52	19	9	19	1.72
424477--424511	18	1.9	18	88	11	54	34	2	2	60	1.26
431563--431649	31	2.8	31	81	6	106	33	16	16	34	1.91
434549--434579	3	10.3	3	100	0	62	67	0	32	0	0.91
434677--434743	30	2.2	32	91	5	111	43	8	11	35	1.73
434677--434752	30	2.5	30	87	8	91	40	9	11	38	1.74
446986--447010	13	1.9	13	100	0	50	56	16	12	16	1.68
447939--447990	3	16.7	3	88	7	77	63	0	0	36	0.95
448124--448992	76	11.4	76	96	0	1569	34	21	19	23	1.96
449850--449904	22	2.5	22	93	0	101	40	14	10	34	1.81
451249--451424	76	2.3	76	81	2	212	27	22	17	31	1.97
452562--452892	114	2.9	114	91	0	527	31	20	15	33	1.93
460253--460277	13	1.9	13	100	0	50	56	16	12	16	1.68
460991--461055	3	21.0	3	84	6	85	61	0	0	38	0.96
463671--463727	15	3.7	15	84	9	71	71	1	5	21	1.14
467523--467606	41	2.0	41	88	0	123	34	21	16	27	1.95
467750--467786	17	2.1	18	95	5	67	27	27	24	21	1.99
475758--475800	23	1.9	22	90	4	68	25	0	2	72	0.97
488324--488532	20	10.4	20	82	5	226	36	26	18	19	1.94
488362--488552	20	9.6	20	84	4	215	36	25	17	20	1.94
488650--488689	22	1.9	21	90	10	64	25	40	7	27	1.82
489245--489291	24	2.0	24	87	8	69	25	14	21	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
489466--489490	12	2.1	12	100	0	50	72	0	28	0	0.86
491752--491951	34	5.8	34	86	9	253	45	19	22	13	1.84
491785--492022	53	4.5	53	85	12	328	45	17	22	13	1.84
491838--492004	87	1.9	86	98	1	325	45	17	23	13	1.83
491999--492114	53	2.2	52	86	3	160	18	22	18	39	1.92
492037--492154	19	6.4	19	84	11	165	14	22	16	46	1.83
492056--492154	33	2.8	35	83	13	130	15	21	17	46	1.84
492018--492135	53	2.2	53	96	1	220	13	22	17	45	1.84
492261--492297	14	2.6	14	91	0	65	45	21	0	32	1.52
494222--494375	19	8.6	19	73	14	130	45	22	20	11	1.83
494240--494370	33	3.8	33	87	5	172	46	21	21	10	1.81
494239--494375	52	2.6	51	71	7	132	45	21	21	10	1.82
494387--494413	14	1.9	14	100	0	54	7	14	29	48	1.71
494371--494465	33	2.9	33	90	0	145	9	17	26	46	1.79
494371--494429	19	3.4	19	77	22	83	6	15	30	47	1.71
494371--494464	19	5.5	18	70	23	69	8	18	26	46	1.77
494434--494480	19	2.4	19	85	3	58	14	17	23	44	1.85
496392--496488	20	5.2	20	72	18	100	46	17	24	11	1.81
496390--496454	21	3.1	21	82	4	96	47	15	26	10	1.78
496439--496495	14	3.7	14	75	20	60	43	22	24	8	1.81
496390--496512	33	3.5	33	90	8	165	46	18	24	10	1.81
496529--496585	14	3.7	14	75	20	60	8	24	22	43	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
496513--496592	33	2.4	33	95	0	142	8	21	22	47	1.78
496573--496646	21	3.5	21	80	7	96	13	21	17	47	1.82
496725--496795	33	2.2	33	94	0	124	47	16	23	11	1.79
497176--497368	20	9.6	20	83	5	228	19	18	26	35	1.95
502109--502136	13	2.2	13	100	0	56	25	21	14	39	1.91
502485--502517	13	2.5	13	95	0	57	39	0	18	42	1.50
502691--502733	16	2.8	15	75	6	50	58	0	4	37	1.19
504759--504823	34	1.9	34	93	3	114	41	6	3	49	1.43
504894--504923	11	2.7	11	94	0	51	63	0	6	30	1.20
505323--505382	15	4.0	15	93	0	102	53	0	0	46	1.00

Tables:   1   2   3   4   5   6