genome.fa.s7751.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007751.1 Hibiscus syriacus cultivar Beakdansim tig00110017_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1434969

Tables:   1   2   3   4   5   6   

This is table  4  of  6  ( 636 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
776438--776472	13	2.6	14	86	13	56	40	0	0	60	0.97
776989--777037	23	2.0	25	88	7	75	42	0	0	57	0.99
777932--777973	21	2.0	21	81	13	50	40	4	21	33	1.74
785087--785176	19	4.4	19	75	16	81	37	5	27	28	1.79
785632--785777	61	2.4	61	88	0	229	32	18	19	29	1.96
785803--785839	19	1.9	19	88	0	56	24	16	27	32	1.96
799419--799573	61	2.6	61	79	10	158	34	16	3	45	1.63
802772--802823	20	2.6	20	93	0	95	30	17	19	32	1.95
810282--810349	31	2.2	31	91	0	109	25	7	25	42	1.80
810305--810424	54	2.2	54	90	0	204	27	7	25	40	1.82
810308--810424	27	4.3	27	83	0	162	27	7	24	40	1.82
814726--814767	2	21.0	2	95	0	75	50	2	0	47	1.14
816800--816844	2	22.5	2	100	0	90	48	0	0	51	1.00
819035--819086	23	2.3	23	100	0	104	17	21	17	44	1.87
820255--820307	20	2.7	20	81	0	70	24	24	20	30	1.99
820863--820904	19	2.2	19	86	0	57	50	28	16	4	1.66
820900--820972	19	4.1	19	77	16	93	10	23	19	46	1.81
822412--822541	63	2.1	63	98	0	251	20	19	37	22	1.94
823114--823202	42	2.1	42	80	0	106	21	38	16	23	1.93
824569--824604	14	2.6	14	95	0	63	30	0	25	44	1.54
824729--824785	14	3.7	14	72	20	51	45	22	24	7	1.77
824711--824800	33	2.7	33	92	0	144	44	21	22	12	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
824711--824771	19	3.5	19	74	21	69	44	21	22	11	1.84
824796--824939	19	8.7	19	63	26	69	13	22	20	44	1.85
824800--824921	33	3.9	32	81	14	148	13	22	20	44	1.85
824906--824948	19	2.3	19	83	0	50	18	18	18	44	1.87
827195--827219	12	2.1	12	100	0	50	0	28	0	72	0.86
827394--827440	24	2.0	24	91	0	76	36	21	17	25	1.94
827394--827447	24	2.2	24	86	0	72	37	20	18	24	1.94
828495--828555	20	3.0	20	97	0	113	36	22	24	16	1.94
828576--828644	14	4.6	14	79	13	84	14	20	18	46	1.84
828573--828644	32	2.4	28	86	9	90	13	20	19	45	1.84
828592--828663	32	2.2	33	85	2	92	15	20	20	43	1.88
828742--828778	14	2.6	14	86	0	56	48	21	0	29	1.50
830618--830684	19	3.5	19	83	4	89	37	23	23	14	1.93
831259--831303	18	2.5	18	88	0	72	13	15	44	26	1.83
832621--832679	20	3.0	20	87	0	73	42	22	18	16	1.89
832938--832977	21	1.9	21	94	0	71	17	12	47	22	1.81
833163--833235	20	3.7	20	96	0	128	24	19	28	27	1.98
833143--833277	20	6.7	19	80	9	90	24	17	24	33	1.96
833934--833964	2	15.5	2	100	0	62	51	0	48	0	1.00
835828--836280	226	2.0	227	99	0	890	29	18	21	30	1.97
842510--842556	22	2.1	22	84	7	60	68	0	0	31	0.90
844793--844830	20	1.9	20	88	0	58	21	26	10	42	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
845003--845031	14	2.0	15	93	6	51	55	3	0	41	1.17
848793--848938	59	2.4	59	82	6	152	33	13	17	34	1.89
850467--850534	27	2.5	27	81	9	93	48	0	2	48	1.16
850659--850710	23	2.2	24	82	6	70	53	3	1	40	1.30
854698--854728	2	15.5	2	100	0	62	51	0	0	48	1.00
861113--861163	24	2.1	24	100	0	102	37	21	15	25	1.93
873561--873598	20	1.9	20	88	0	58	36	0	21	42	1.53
873559--873604	20	2.3	20	80	0	56	32	0	19	47	1.50
880912--880957	23	2.0	24	86	4	67	69	2	0	28	1.00
881799--881837	15	2.6	15	88	8	53	56	0	0	43	0.99
881952--882043	48	1.9	48	84	4	123	14	39	14	32	1.85
888517--888552	16	2.2	16	95	0	63	47	0	19	33	1.50
888619--888737	61	2.0	60	83	1	148	37	3	22	36	1.71
889857--889910	24	2.2	24	84	12	67	59	22	11	7	1.56
892300--892932	42	15.1	40	82	9	412	20	18	24	36	1.95
892284--892929	63	10.3	62	82	9	537	20	18	24	36	1.95
892284--892929	105	6.2	103	87	5	899	20	18	24	36	1.95
893133--893201	30	2.2	30	80	15	77	34	5	15	43	1.71
893292--893357	21	3.1	21	86	4	96	19	42	25	12	1.86
893383--893426	21	2.1	21	100	0	88	13	45	27	13	1.81
893462--893503	21	2.0	21	95	0	75	23	21	28	26	1.99
893532--893571	20	1.9	21	85	10	55	37	35	10	17	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
894235--894289	21	2.8	20	86	8	76	29	23	23	23	1.99
894359--894401	19	2.3	19	95	0	77	23	20	25	30	1.99
894366--894409	19	2.3	19	92	0	70	22	18	25	34	1.96
900143--900189	19	2.5	19	96	0	85	44	25	10	19	1.82
900441--900470	14	2.1	14	100	0	60	20	36	13	30	1.90
908822--908846	13	1.9	13	100	0	50	48	0	0	52	1.00
909105--909140	18	2.0	18	100	0	72	61	0	0	38	0.96
909803--909827	13	1.9	13	100	0	50	48	0	0	52	1.00
908162--910025	981	1.9	961	94	3	3077	33	16	12	37	1.86
924021--924060	4	10.0	4	83	0	53	70	5	0	25	1.08
928102--928143	14	3.0	14	96	0	75	42	16	0	40	1.48
928104--928150	7	6.7	7	83	9	60	44	17	0	38	1.48
929142--929193	16	3.2	17	72	22	58	42	0	19	38	1.51
929485--929524	21	1.9	21	85	10	55	32	15	2	50	1.57
931309--931363	27	2.0	27	100	0	110	18	38	18	25	1.93
934994--935125	60	2.2	60	84	6	162	40	9	9	41	1.68
935668--936316	337	1.9	335	89	1	1005	40	13	11	35	1.80
938150--938174	2	12.5	2	100	0	50	52	0	48	0	1.00
942710--943336	322	2.0	321	88	1	943	39	12	11	35	1.80
947313--947353	21	2.0	21	85	0	55	53	2	4	39	1.35
948762--948815	2	27.0	2	100	0	108	50	0	0	50	1.00
949097--949176	23	3.4	24	70	6	74	33	20	20	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
949249--949303	15	3.6	15	77	2	56	43	18	1	36	1.61
952179--952369	97	2.0	97	89	4	296	25	20	13	40	1.89
953149--953173	13	1.9	13	100	0	50	36	0	0	64	0.94
955770--955830	31	2.0	31	86	0	86	39	16	11	32	1.84
957484--957526	21	2.0	21	100	0	86	32	11	32	23	1.90
978219--978328	58	1.9	58	100	0	220	40	16	13	30	1.87
979004--979034	15	2.1	15	100	0	62	38	12	12	35	1.82
981165--981337	58	2.9	58	79	5	195	33	13	15	37	1.87
983307--983340	8	4.4	8	96	3	61	64	0	0	35	0.94
983311--983348	16	2.5	16	87	8	53	60	0	2	36	1.11
986730--986777	21	2.2	20	78	10	51	54	0	4	41	1.20
987066--987103	18	2.1	18	90	5	58	63	0	0	36	0.95
987395--987456	12	5.6	12	70	14	53	45	1	1	51	1.20
987421--987785	22	16.6	22	93	1	606	39	0	10	49	1.38
988333--988403	34	2.1	34	84	7	90	49	8	7	35	1.60
988524--988579	21	2.8	19	76	10	58	64	3	0	32	1.11
994681--994733	15	3.5	15	76	20	56	45	0	15	39	1.46
995049--995078	2	15.0	2	100	0	60	50	0	0	50	1.00
995988--996028	20	2.0	21	85	4	57	39	0	4	56	1.21
996776--996816	14	2.9	15	80	20	52	56	0	0	43	0.99
996792--996874	25	3.1	25	73	15	85	55	3	0	40	1.17
999758--999883	60	2.1	60	81	0	144	37	13	12	36	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1004264--1004320	29	2.0	29	89	0	87	40	3	14	42	1.62
1005230--1005268	20	1.9	21	84	5	53	66	5	2	25	1.25
1009085--1009129	20	2.2	19	81	18	54	60	0	2	37	1.09
1009604--1010177	73	7.8	74	89	3	838	39	13	13	32	1.85
1009604--1010176	147	3.9	146	89	3	839	39	13	13	32	1.85
1009604--1010177	220	2.6	220	90	2	873	39	13	13	32	1.85
1010257--1010486	112	2.0	113	90	3	363	45	12	14	27	1.81
1012059--1012085	2	13.5	2	100	0	54	51	0	0	48	1.00
1019717--1019795	33	2.4	33	97	0	149	37	15	22	24	1.92
1019704--1019795	33	2.7	35	91	6	129	36	17	22	22	1.94

Tables:   1   2   3   4   5   6