genome.fa.s7751.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007751.1 Hibiscus syriacus cultivar Beakdansim tig00110017_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1434969

Tables:   1   2   3   4   5   6   

This is table  3  of  6  ( 636 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
505326--505425	15	6.3	15	76	18	60	48	0	3	49	1.16
505428--505524	22	4.0	22	70	23	77	36	0	12	51	1.40
505323--505480	69	2.3	67	83	6	203	44	0	5	50	1.26
505408--505573	54	3.1	54	99	0	323	35	0	12	52	1.39
505450--505707	134	1.9	134	98	0	498	34	0	13	51	1.42
505408--505761	188	1.9	188	98	0	681	35	0	12	51	1.40
505616--505712	22	4.0	22	70	23	77	37	0	12	50	1.40
505584--505815	54	4.3	54	97	0	437	35	0	12	51	1.40
505381--505838	242	1.9	234	94	3	808	35	0	12	51	1.40
505724--505766	22	2.0	22	100	0	86	34	0	13	51	1.42
507839--508005	43	3.9	43	84	3	212	23	19	16	40	1.91
507845--508005	84	1.9	86	88	2	245	24	19	16	40	1.91
507852--508030	84	2.1	86	83	2	218	26	18	16	37	1.92
509370--509411	21	2.0	21	95	0	75	21	28	30	19	1.97
510755--510806	22	2.4	22	100	0	104	38	0	3	57	1.17
510767--510831	11	6.1	11	75	5	62	47	1	1	49	1.20
511224--511535	123	2.5	123	83	5	378	33	19	20	26	1.97
511241--511535	82	3.6	82	84	7	364	33	19	20	26	1.96
511241--511493	41	6.2	41	87	4	343	34	20	19	25	1.96
511241--511535	41	7.2	40	83	5	279	33	19	20	26	1.96
530917--530985	33	2.1	33	94	0	120	24	24	21	28	1.99
532273--532323	17	2.9	18	77	11	52	60	3	1	33	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
534265--534321	19	3.0	19	76	5	62	38	10	10	40	1.74
536705--536748	23	2.0	22	86	8	63	72	0	0	27	0.85
544758--544788	16	1.9	16	93	0	53	41	25	12	19	1.87
560193--560507	45	7.0	45	91	0	450	24	19	28	26	1.99
566518--566567	6	8.3	6	100	0	100	34	48	18	0	1.48
567166--567384	21	10.5	21	91	1	325	32	22	22	21	1.98
567586--567671	43	2.0	43	100	0	172	34	11	25	27	1.91
572466--572561	39	2.5	40	83	6	119	20	13	8	57	1.62
578697--578771	11	6.8	10	72	14	51	65	1	2	30	1.15
578681--578791	52	2.2	48	83	13	127	60	0	4	34	1.23
580539--581204	105	6.3	105	98	0	1278	22	18	24	35	1.96
591439--591472	10	3.4	10	87	0	50	73	0	5	20	1.04
593087--593123	2	18.5	2	100	0	74	51	0	0	48	1.00
599362--599452	24	3.8	24	76	2	94	26	16	19	37	1.93
602995--603119	27	4.3	29	80	15	89	44	3	0	52	1.17
603028--603121	27	3.3	26	80	15	98	41	4	0	54	1.20
602995--603120	29	4.3	29	79	13	109	43	3	0	53	1.16
603160--603335	95	1.8	95	86	3	253	47	0	6	45	1.32
603330--603395	25	2.5	25	76	14	62	65	0	1	33	1.02
603333--603388	29	1.9	29	88	0	85	64	0	1	33	1.04
603327--603433	54	2.0	55	80	10	123	58	0	3	37	1.16
613419--613479	17	3.4	18	77	8	63	32	8	11	47	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
620238--620345	51	2.2	49	83	9	132	25	22	24	28	1.99
621081--621727	322	2.0	322	98	0	1258	27	21	23	28	1.99
624536--624695	64	2.5	63	83	6	189	34	20	20	25	1.96
625183--625218	17	2.0	19	89	10	58	44	5	11	38	1.63
625415--625503	30	3.0	30	83	1	108	16	19	29	34	1.94
625432--625503	29	2.4	30	86	2	92	18	19	30	31	1.95
626914--627134	110	2.0	111	92	0	372	46	9	8	35	1.66
646080--646154	31	2.6	28	82	12	105	38	13	13	34	1.84
651758--651794	19	1.9	19	100	0	74	32	5	27	35	1.79
655151--655244	22	4.4	22	80	12	115	18	18	25	38	1.93
655355--655396	5	8.2	5	94	5	75	23	57	19	0	1.41
655347--655393	21	2.2	21	96	0	85	25	57	17	0	1.40
655355--655396	16	2.7	15	92	7	75	23	57	19	0	1.41
656027--656144	20	5.8	20	77	3	119	37	23	21	17	1.94
656027--656144	61	1.9	61	96	0	218	37	23	21	17	1.94
658437--658470	16	2.2	16	89	5	52	52	26	2	17	1.58
666329--666408	30	2.7	29	76	12	83	55	16	10	18	1.69
668641--668855	114	1.9	115	86	0	306	24	17	12	45	1.83
679507--679664	21	7.8	20	71	9	88	38	25	16	19	1.92
679567--679683	20	5.7	20	75	12	78	38	23	17	20	1.93
679651--679860	20	10.5	20	82	5	219	36	24	18	20	1.95
680541--680586	24	2.0	23	87	12	67	26	15	21	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
680761--680785	12	2.1	12	100	0	50	72	0	28	0	0.86
683063--683291	33	6.9	33	84	8	322	45	18	23	12	1.84
683130--683283	47	3.2	47	89	8	254	45	18	24	11	1.83
683448--683484	14	2.6	14	91	0	65	45	21	0	32	1.52
685439--685495	14	3.7	14	77	20	60	45	22	21	10	1.82
685420--685512	33	2.8	33	93	0	159	47	21	19	11	1.81
685383--685517	19	7.6	19	75	16	119	45	23	18	11	1.82
685513--685589	19	4.3	19	76	17	83	9	15	29	45	1.77
685637--686105	93	5.1	93	98	0	904	46	18	12	22	1.83
687825--687908	19	4.7	19	80	14	106	44	22	22	10	1.84
687803--687908	52	2.0	52	96	0	194	45	20	23	10	1.82
687904--687984	33	2.5	33	93	0	135	8	20	22	48	1.77
687915--687979	14	4.3	14	76	17	67	7	23	21	47	1.76
687960--688036	21	3.8	21	82	5	104	12	23	16	46	1.82
688116--688186	33	2.2	33	92	0	115	47	18	22	11	1.80
688369--688422	22	2.5	22	81	0	72	20	16	38	24	1.92
688570--688763	20	9.6	20	81	5	212	19	19	25	36	1.95
688570--688763	60	3.2	60	82	0	244	19	19	25	36	1.95
688750--688832	21	4.0	21	73	6	78	25	16	24	33	1.96
688730--688828	42	2.4	43	77	11	100	21	18	23	37	1.94
689813--689873	31	1.9	32	90	3	97	52	0	13	34	1.40
690538--690668	67	2.0	67	93	0	226	39	16	21	22	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
694361--694399	19	2.0	20	85	14	55	61	0	0	38	0.96
695064--695119	29	2.0	26	86	10	76	55	7	12	25	1.62
696440--696500	21	3.2	21	61	29	55	36	4	16	42	1.70
696438--696553	35	3.3	35	89	4	178	35	4	17	43	1.69
701037--701105	37	1.9	36	88	5	104	30	4	18	46	1.69
712402--712441	2	19.5	2	94	5	71	50	0	2	47	1.14
713901--713951	26	2.0	26	88	0	75	33	31	1	33	1.69
717451--717477	10	2.7	10	100	0	54	37	51	11	0	1.37
717546--717578	16	2.1	16	100	0	66	57	24	12	6	1.57
717643--717701	10	5.7	10	73	15	57	57	20	11	10	1.63
717647--717695	16	3.1	16	93	0	89	57	22	12	8	1.61
718444--718489	14	3.3	14	87	0	74	52	23	13	10	1.71
718424--718489	28	2.6	25	83	13	73	54	19	12	13	1.70
718661--719061	12	34.2	12	76	10	321	34	48	15	1	1.53
718662--719061	38	10.5	38	80	4	367	34	48	15	1	1.53
718690--719061	26	14.2	26	77	7	306	34	48	15	1	1.52
720186--720225	19	2.1	19	86	9	55	57	2	2	37	1.26
724500--724576	27	2.9	27	92	0	127	29	24	29	15	1.96
724549--724594	18	2.6	18	92	0	74	23	28	32	15	1.95
724591--724703	24	4.7	24	86	0	154	30	28	30	11	1.92
724549--724606	18	3.2	18	87	4	64	25	29	31	13	1.94
734956--734998	16	2.7	16	78	10	52	65	0	2	32	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
740009--740041	17	1.9	17	88	11	50	33	0	0	66	0.92
740672--740736	22	2.9	22	73	13	60	44	0	0	55	0.99
740672--740739	24	2.9	24	69	20	63	45	0	0	54	0.99
739932--741326	697	2.0	695	96	2	2572	41	9	11	37	1.74
741230--741314	39	2.3	36	86	8	116	25	11	9	52	1.67
746211--746255	21	2.1	22	88	8	67	28	11	11	48	1.73
746711--746741	16	1.9	16	93	0	53	19	12	25	41	1.87
749983--750124	60	2.4	59	83	3	167	35	18	5	40	1.74
767901--767968	27	2.6	27	86	6	86	41	16	8	33	1.79
772297--772679	138	2.8	136	85	4	457	29	15	14	39	1.88

Tables:   1   2   3   4   5   6