Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007751.1 Hibiscus syriacus cultivar Beakdansim tig00110017_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1434969

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 636 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1360046--1360195
76
2.0
76
88
3
223
28
10
18
43
1.82
1359932--1360309
189
2.0
190
99
0
749
28
11
19
41
1.85
1360121--1360435
114
2.8
110
88
3
454
28
10
20
40
1.86
1360583--1360614
16
2.0
16
93
0
55
34
0
15
50
1.45
1361556--1361595
21
1.9
21
85
10
55
42
7
10
40
1.67
1362424--1362815
195
2.0
196
98
1
761
28
21
21
28
1.99
1364307--1364348
18
2.3
18
80
8
50
30
0
4
64
1.14
1366728--1366844
60
2.0
60
87
0
171
29
22
21
27
1.99
1367696--1367765
11
6.5
11
74
9
65
65
1
2
30
1.15
1367699--1367827
58
2.3
57
81
11
149
60
1
2
35
1.19
1367783--1367815
16
2.2
15
89
10
50
60
3
0
36
1.12
1371093--1371129
18
2.0
19
89
5
58
45
0
0
54
1.00
1378502--1378534
16
2.1
16
100
0
66
57
24
12
6
1.57
1378604--1378664
16
3.8
16
95
0
113
55
22
13
8
1.64
1379681--1379755
24
3.1
24
92
0
114
54
21
12
12
1.69
1379701--1379756
14
4.3
14
82
17
75
51
25
14
8
1.70
1379694--1379741
10
4.4
10
78
19
51
54
22
12
10
1.68
1390528--1390552
13
1.9
13
100
0
50
32
24
20
24
1.98
1390548--1390622
22
3.5
21
70
15
64
25
20
22
32
1.98
1390540--1390922
42
9.0
42
69
12
210
29
18
21
30
1.97
1390540--1390603
20
3.1
20
70
16
67
23
23
25
28
2.00
1390436--1390717
135
2.1
135
93
0
474
29
19
22
28
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1390663--1390687
13
1.9
13
100
0
50
32
24
20
24
1.98
1390582--1390767
93
2.0
93
98
0
363
31
19
20
27
1.97
1390763--1390868
20
5.0
21
67
21
78
29
16
22
32
1.95
1391364--1391567
53
3.8
53
90
1
293
28
22
26
22
1.99
1409681--1409708
14
2.0
14
100
0
56
28
14
21
35
1.92
1419656--1419710
6
9.2
6
93
0
92
34
0
61
3
1.13
1427392--1427559
84
2.0
84
97
0
318
21
13
17
48
1.81
1429022--1429266
38
6.4
36
75
17
219
48
3
4
43
1.38
1429010--1429272
115
2.3
114
84
7
329
47
3
4
44
1.39
1429254--1429316
17
3.8
16
71
12
56
46
0
6
47
1.28
1429238--1429347
32
3.5
31
76
15
120
45
0
5
49
1.25
1429389--1429439
3
16.7
3
76
11
50
31
5
0
62
1.19
1429689--1429718
16
1.9
15
93
6
51
20
33
26
20
1.97
1431024--1431090
14
4.8
14
72
15
50
25
4
0
70
1.06

Tables:   1   2   3   4   5   6

The End!