genome.fa.s7777.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007777.1 Hibiscus syriacus cultivar Beakdansim tig00110059_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1720799

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  2  of  10  ( 1086 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
189185--189249	21	3.1	21	93	0	103	41	10	30	16	1.83
191282--192058	200	3.9	200	94	1	1326	36	14	16	31	1.90
193518--193596	18	4.6	18	79	9	92	39	6	32	21	1.79
193518--193632	12	9.3	12	83	5	95	37	4	33	25	1.76
193535--193633	3	33.0	3	85	0	135	36	3	33	27	1.72
194843--196144	183	7.1	182	94	1	2171	35	14	16	33	1.89
194843--196144	548	2.4	549	94	1	2270	35	14	16	33	1.89
198988--199060	23	3.2	23	92	0	119	34	5	21	38	1.77
199478--199550	23	3.2	23	92	0	119	34	5	21	38	1.77
199968--200040	23	3.2	23	86	0	101	35	6	19	38	1.78
198641--201421	490	5.7	490	97	0	5212	41	7	11	40	1.69
200457--200529	23	3.2	23	92	0	119	34	5	21	38	1.77
198641--201421	979	2.8	978	97	0	5244	41	7	11	40	1.69
200947--201019	23	3.2	23	88	0	110	34	5	20	39	1.76
200947--201044	46	2.1	45	81	7	108	33	7	17	41	1.77
204038--204081	19	2.3	20	84	7	65	22	31	27	18	1.97
204038--204086	9	5.2	9	82	4	53	26	32	24	16	1.96
206802--206967	57	2.9	57	86	3	226	41	19	3	35	1.67
206813--206968	29	5.4	29	88	2	215	40	20	3	35	1.69
207011--207061	19	2.6	20	78	3	59	27	27	25	19	1.99
208243--208295	23	2.2	24	86	6	81	37	20	15	26	1.92
209045--209101	29	2.0	29	89	6	89	28	14	17	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
215153--215209	23	2.4	24	82	5	71	36	24	19	19	1.94
217274--217323	23	2.2	23	88	0	73	42	10	16	32	1.81
217403--217925	200	2.6	198	82	4	606	30	15	14	40	1.86
220620--220686	19	3.5	19	89	0	98	55	8	2	32	1.46
221878--223071	200	6.0	200	86	3	1522	31	16	13	38	1.87
225221--225343	44	2.9	43	75	8	126	24	19	23	32	1.97
225605--225678	32	2.3	32	83	0	85	29	21	13	35	1.92
232892--232986	32	3.0	31	81	6	100	57	9	11	21	1.61
236579--236646	3	22.3	3	85	8	93	61	0	1	36	1.05
237809--237845	18	2.1	18	89	0	56	51	10	5	32	1.60
240007--241231	201	6.1	201	89	1	1778	32	15	14	37	1.88
240007--241231	401	3.1	400	89	1	1828	32	15	14	37	1.88
241687--241735	19	2.6	19	93	6	82	55	8	4	32	1.48
243291--243325	18	1.9	18	100	0	70	8	34	0	57	1.29
243490--243534	21	2.1	21	83	0	54	24	44	2	28	1.66
243682--243717	15	2.3	16	85	9	56	11	55	8	25	1.62
243984--244031	24	2.1	24	84	7	64	43	6	0	50	1.27
245992--246473	182	2.6	182	89	2	700	27	17	13	41	1.87
248844--248915	30	2.4	30	100	0	144	20	12	29	37	1.90
253245--253296	19	3.0	16	81	13	59	28	11	17	42	1.84
253437--253548	23	4.9	23	84	0	143	17	22	25	33	1.96
260403--260465	23	2.7	24	80	7	76	22	19	26	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
261299--261423	35	3.6	35	72	12	112	29	15	27	28	1.96
263529--263584	2	28.0	2	100	0	112	50	0	0	50	1.00
269339--269375	18	2.0	20	89	10	60	48	10	18	21	1.78
270483--270529	2	24.0	2	95	4	87	51	0	0	48	1.00
271565--271656	37	2.7	35	80	11	95	53	0	1	45	1.07
271597--271703	42	2.7	38	80	10	119	49	0	1	48	1.12
271695--271727	8	4.2	8	84	7	50	66	0	0	33	0.92
271699--271734	14	2.5	15	95	4	65	72	0	0	27	0.85
271781--271877	49	2.0	48	84	9	126	47	0	3	49	1.17
271857--271909	13	4.1	14	72	16	51	47	0	0	52	1.00
272721--272754	17	2.0	17	88	0	50	38	0	2	58	1.13
279071--279207	46	3.0	46	81	3	159	35	12	17	35	1.87
280275--280309	16	2.1	18	89	10	56	65	0	8	25	1.21
280320--280357	20	1.9	20	88	0	58	63	2	7	26	1.35
280982--281502	239	2.2	238	84	6	673	40	8	10	39	1.71
283806--283887	43	1.9	42	92	2	137	21	9	24	43	1.83
288551--288590	16	2.4	16	87	4	53	50	0	2	47	1.14
291825--291912	45	2.0	45	86	4	124	36	9	20	34	1.84
291907--291958	15	3.5	15	82	12	54	30	3	23	42	1.72
291922--291958	14	2.4	16	86	8	51	29	5	21	43	1.75
292049--292130	23	3.5	23	81	1	92	21	23	21	32	1.98
292088--292143	24	2.4	23	88	8	78	16	23	26	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
292049--292143	23	4.1	24	81	6	81	20	23	24	32	1.98
296069--296457	213	1.8	213	92	0	652	32	13	24	30	1.93
299502--299610	45	2.4	45	81	3	130	35	10	20	33	1.86
299584--299623	14	2.7	15	80	3	55	35	7	22	35	1.82
299707--299766	23	2.6	23	70	0	57	16	25	25	33	1.96
306940--306984	22	2.0	22	82	0	54	20	24	31	24	1.98
307063--307113	22	2.3	22	86	0	66	21	9	47	21	1.79
307367--307401	14	2.5	14	90	9	54	68	0	0	31	0.90
307563--307704	43	3.4	42	73	16	123	23	15	25	35	1.94
307556--307745	83	2.3	83	85	1	256	23	15	25	35	1.94
307644--308231	137	4.3	137	95	0	996	23	16	25	34	1.95
307922--308115	43	4.3	43	66	16	133	23	17	26	32	1.96
318158--318184	2	13.5	2	100	0	54	51	0	0	48	1.00
318990--319048	22	2.7	22	86	0	82	16	35	18	28	1.93
319527--319570	22	2.0	22	95	0	79	18	13	52	15	1.75
319708--319749	18	2.4	17	88	11	59	7	16	38	38	1.76
319717--319751	18	1.9	18	100	0	70	11	11	40	37	1.77
319837--319883	14	3.5	13	88	11	69	65	2	0	31	1.04
319826--319883	26	2.2	26	87	6	82	62	1	0	36	1.06
320935--320968	12	2.7	13	86	9	52	41	5	8	44	1.60
321192--321230	20	1.9	21	89	5	62	53	12	2	30	1.52
323232--323287	20	2.8	20	97	0	103	26	19	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
325562--325710	75	2.0	74	94	5	266	19	18	31	30	1.96
330664--330822	64	2.5	63	83	7	198	35	17	20	26	1.94
331307--331342	17	2.0	19	89	10	58	44	5	11	38	1.63
331478--331569	31	3.0	31	76	6	87	27	17	21	33	1.96
331498--331604	31	3.5	30	77	6	81	24	17	24	33	1.96
334797--334953	62	2.5	62	81	8	176	34	19	20	26	1.96
335441--335476	17	2.0	19	89	10	58	44	5	11	38	1.63
335626--335700	31	2.4	31	78	8	80	29	17	22	30	1.97
335687--335755	27	2.4	29	78	4	70	18	20	30	30	1.97
336374--336457	42	2.0	42	100	0	168	30	14	21	33	1.93
337730--337772	20	2.1	21	87	8	63	18	13	0	67	1.23
337729--337778	20	2.5	20	75	15	59	18	18	0	64	1.30
341574--341607	17	2.1	16	88	5	50	14	8	0	76	1.01
375182--375232	3	16.7	3	79	4	57	35	1	0	62	1.06
375701--375746	22	2.0	23	84	12	60	63	15	19	2	1.41
376581--376639	29	2.0	30	83	9	77	28	6	3	61	1.38
376728--376753	2	13.0	2	100	0	52	50	0	0	50	1.00
377006--377053	21	2.4	19	80	10	60	31	2	0	66	1.03
377003--377048	25	1.9	23	82	8	56	30	2	0	67	1.03
379855--379907	14	4.0	13	74	11	54	24	11	1	62	1.39
387147--387732	45	13.0	45	90	0	857	24	22	18	34	1.96
387963--388008	3	15.0	3	81	4	56	30	2	0	67	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
389359--389416	29	2.0	30	83	10	75	27	6	3	62	1.37
389505--389532	2	14.0	2	100	0	56	50	0	0	50	1.00
389789--389830	13	3.3	13	80	6	50	26	2	0	71	0.98
389787--389842	23	2.3	23	85	14	78	28	1	0	69	0.98
389797--389834	10	3.8	10	83	10	51	21	0	0	78	0.74
392597--392642	20	2.2	20	85	11	58	30	21	23	23	1.99
392673--392743	21	3.4	21	73	7	54	38	22	12	26	1.90
394570--394625	15	3.9	14	79	6	58	25	28	19	26	1.99
405970--406056	15	5.5	15	72	20	79	24	32	25	18	1.97
405969--406058	32	2.8	32	93	0	153	24	31	25	18	1.98

Tables:   1   2   3   4   5   6   7   8   9   10