genome.fa.s7777.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007777.1 Hibiscus syriacus cultivar Beakdansim tig00110059_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1720799

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  3  of  10  ( 1086 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
405984--406043	17	3.6	17	73	8	61	25	33	25	16	1.96
405970--406070	32	3.2	32	88	2	150	24	30	25	18	1.98
406096--406133	16	2.3	16	90	4	58	26	34	26	13	1.93
410348--410394	21	2.2	21	85	7	60	31	23	14	29	1.95
412735--412793	21	2.8	21	94	0	109	30	28	16	23	1.97
413814--413838	13	1.9	13	100	0	50	16	20	0	64	1.30
416563--416616	18	3.1	18	86	2	74	51	12	20	14	1.75
417164--417288	42	3.0	42	78	4	144	34	24	14	27	1.94
420136--420498	3	122.7	3	93	6	627	65	0	0	34	0.93
423761--423817	27	2.2	25	80	19	73	61	3	0	35	1.13
425141--425387	122	2.0	124	96	3	464	54	8	6	29	1.58
427697--427745	2	24.5	2	100	0	98	51	0	0	48	1.00
427899--427958	25	2.4	24	81	8	75	53	21	1	23	1.55
427911--427957	17	2.8	16	93	3	76	51	23	0	25	1.49
427911--427957	8	5.6	8	90	9	76	51	23	0	25	1.49
429901--429937	19	1.9	19	89	10	58	32	5	27	35	1.79
433986--434018	16	2.1	16	88	11	50	18	18	12	51	1.76
437663--437702	17	2.6	16	82	17	50	62	0	0	37	0.95
458146--458189	17	2.6	17	88	0	70	43	18	11	27	1.84
463952--464009	16	3.6	16	88	0	89	58	20	10	10	1.60
464242--464279	12	3.2	12	88	3	60	21	23	26	28	1.99
464218--464275	24	2.5	24	85	2	73	25	25	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
465156--465203	10	4.4	10	78	19	51	54	22	12	10	1.68
465163--465218	14	4.3	14	80	17	66	50	23	16	10	1.76
465143--465210	24	2.8	24	88	4	102	55	19	11	13	1.67
467523--467690	75	2.2	76	82	5	198	35	8	4	52	1.51
468045--468079	17	2.1	16	89	5	52	65	0	0	34	0.93
471254--471330	38	2.0	38	94	0	136	25	29	15	28	1.96
484239--484267	6	4.8	6	100	0	58	17	0	0	82	0.66
485164--485190	13	2.1	13	100	0	54	7	14	40	37	1.74
494716--494754	21	1.9	20	84	5	51	10	2	20	66	1.33
495133--495312	90	2.0	90	96	0	333	35	15	19	29	1.93
501066--501318	125	2.0	127	97	2	483	29	18	18	33	1.95
502806--502996	95	2.0	95	98	0	373	30	21	16	30	1.96
506715--506754	14	2.9	14	85	3	55	25	27	22	25	2.00
510915--510975	31	2.0	31	90	0	95	31	8	4	55	1.50
512604--512635	14	2.3	14	94	0	55	37	0	3	59	1.13
512780--512824	14	3.2	14	80	0	54	42	0	2	55	1.12
512814--512881	36	1.9	35	84	3	91	51	0	4	44	1.21
512847--512968	55	2.3	55	78	12	128	51	0	0	46	1.12
512940--512986	22	2.1	23	92	4	78	57	0	0	42	0.98
512923--512992	32	2.2	32	82	10	81	55	0	0	44	0.99
512948--512991	22	2.0	22	86	8	63	59	0	0	40	0.98
512896--513054	55	3.0	56	78	14	133	49	0	1	47	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
517966--518016	22	2.3	22	89	0	84	41	17	5	35	1.74
523799--523870	22	3.3	22	94	0	117	40	19	5	34	1.75
524307--524354	14	3.4	14	82	5	69	10	10	0	79	0.95
524299--524355	29	2.0	29	89	6	89	10	10	0	78	0.95
524308--524355	7	6.9	7	83	6	62	10	12	0	77	1.00
530937--530977	2	20.5	2	89	0	64	53	0	0	46	1.00
530938--531025	24	3.7	23	74	7	59	50	1	3	45	1.26
536546--536658	3	38.3	3	80	7	106	59	0	0	40	0.97
536547--536614	18	3.8	18	100	0	136	52	0	0	47	1.00
536601--536658	16	3.8	15	80	10	64	67	0	0	32	0.91
536977--537527	122	4.7	121	82	9	574	27	19	14	38	1.90
537222--537527	113	2.7	112	87	4	438	28	19	13	37	1.90
537221--537519	111	2.7	111	87	3	431	29	19	13	37	1.90
548476--548527	20	2.5	22	81	12	65	65	1	3	28	1.21
550762--550849	3	30.0	3	80	8	92	63	2	1	32	1.14
551553--551650	32	3.1	33	85	5	139	24	15	21	38	1.92
556574--556645	30	2.4	30	95	0	126	26	19	23	30	1.98
558928--558993	31	2.1	33	88	5	100	22	13	24	39	1.90
559861--559890	7	4.3	7	100	0	60	26	16	0	56	1.40
560032--560073	19	2.2	20	82	4	50	19	11	4	64	1.44
560982--561354	138	2.7	139	79	7	418	30	13	12	44	1.80
560952--561423	138	3.4	137	76	6	416	29	12	13	44	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
565643--565691	23	2.1	23	92	0	80	24	12	14	48	1.77
569894--569952	9	6.3	9	78	7	55	15	27	28	28	1.96
569893--569950	19	3.1	19	75	7	64	17	24	29	29	1.97
570845--571173	165	2.0	165	98	1	635	30	12	21	34	1.91
573845--573870	7	3.7	7	100	0	52	30	15	0	53	1.42
575584--576108	139	3.9	137	77	12	535	29	13	14	42	1.83
575584--576108	138	3.9	137	79	8	554	29	13	14	42	1.83
575801--576055	127	2.0	128	83	5	320	27	15	14	42	1.86
576959--576993	6	6.0	6	93	6	63	17	31	34	17	1.93
577306--577351	2	23.0	2	95	0	83	47	0	2	50	1.13
577580--577626	22	2.1	22	100	0	94	36	12	12	38	1.82
577584--577632	22	2.2	22	92	0	80	36	8	16	38	1.78
583005--583050	2	23.0	2	100	0	92	50	0	0	50	1.00
583238--583326	29	3.0	27	70	15	70	59	4	13	22	1.52
584868--585360	136	3.6	136	86	2	623	27	17	14	40	1.89
585413--585457	23	2.0	22	83	12	56	15	26	6	51	1.68
585281--585670	120	3.2	121	91	2	604	25	18	15	40	1.90
585568--585758	83	2.3	82	88	4	276	26	17	16	39	1.90
585838--586041	101	2.0	103	91	1	331	26	22	14	36	1.93
586801--586950	54	2.8	53	77	5	158	24	19	16	40	1.90
587638--587802	75	2.3	72	84	7	201	31	23	13	30	1.94
587681--587880	75	2.7	76	82	5	246	31	22	15	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
590719--590853	72	1.9	72	87	3	200	34	19	20	25	1.96
593226--593270	20	2.2	20	84	0	54	71	2	8	17	1.23
595423--595468	22	2.1	21	84	11	58	54	2	0	43	1.12
595670--595751	29	2.8	28	74	7	83	60	2	13	23	1.44
596339--596367	14	2.0	15	93	6	51	6	24	0	68	1.13
598159--598372	75	2.9	75	86	4	308	57	11	1	29	1.43
601693--601753	21	3.0	21	85	9	90	19	36	29	14	1.92
601693--601753	20	3.0	20	88	7	88	19	36	29	14	1.92
601746--601801	15	3.5	15	71	21	51	19	35	25	19	1.95
601719--601802	33	2.5	34	94	3	143	20	34	27	17	1.95
601914--601954	21	2.0	21	90	0	64	24	17	31	26	1.97
602238--602307	34	2.1	32	86	5	95	31	15	30	22	1.95
605259--605319	21	3.0	20	81	9	79	19	34	27	18	1.95
605286--605370	34	2.5	35	94	1	145	21	36	24	17	1.94
605312--605368	15	3.5	15	72	25	53	21	36	22	19	1.95
605484--605525	21	2.0	21	95	0	75	23	21	28	26	1.99
605554--605593	20	1.9	21	85	10	55	37	37	10	15	1.80
605808--605877	34	2.1	32	89	5	104	31	15	31	21	1.95
611338--611553	76	2.9	76	88	2	301	56	14	0	27	1.44
617254--617386	60	2.2	59	80	5	140	34	15	18	30	1.93
624217--624320	31	3.2	31	74	15	102	20	20	23	36	1.95
624210--624309	35	3.0	34	72	16	109	17	23	24	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
629291--629371	40	2.0	40	97	0	153	20	8	14	55	1.66
639642--639692	9	6.3	9	78	17	51	82	0	7	9	0.85
639643--639692	16	3.2	16	86	10	61	82	0	8	10	0.86
640785--641119	113	3.0	113	90	0	492	28	22	17	31	1.96
641038--641147	48	2.3	48	87	3	150	29	20	16	33	1.95
641388--641434	3	15.7	3	86	8	51	38	2	0	59	1.09
646378--646439	18	3.4	18	76	8	63	35	8	8	48	1.62
646378--646439	6	10.3	6	79	6	54	35	8	8	48	1.62
647656--647700	20	2.2	21	88	4	65	31	17	11	40	1.85
647999--648048	21	2.4	21	83	3	66	40	12	12	36	1.79

Tables:   1   2   3   4   5   6   7   8   9   10