genome.fa.s7777.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007777.1 Hibiscus syriacus cultivar Beakdansim tig00110059_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1720799

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  5  of  10  ( 1086 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
863889--864107	79	3.0	74	78	13	186	45	3	3	48	1.34
864208--864271	21	2.9	21	80	15	67	48	3	1	46	1.27
864260--864582	69	4.8	66	73	19	194	52	2	5	39	1.39
864467--864600	63	2.2	62	81	14	158	55	1	5	36	1.33
864337--864582	135	1.9	128	84	12	326	52	2	6	38	1.40
864850--865137	135	2.1	134	82	8	334	40	4	2	51	1.36
864915--865307	135	2.7	140	80	16	413	41	5	2	51	1.36
865011--865455	114	3.8	118	71	20	271	40	5	2	51	1.39
865011--865229	118	1.8	114	80	13	253	40	5	3	51	1.40
865042--865382	163	2.1	156	79	13	363	41	5	2	50	1.40
865549--865581	2	17.0	2	93	6	59	48	0	0	51	1.00
866005--866082	2	39.5	2	92	7	133	48	0	1	50	1.09
866080--866106	4	6.8	4	100	0	54	25	0	22	51	1.48
866561--866605	23	2.0	23	86	8	65	46	2	8	42	1.47
866541--866605	29	2.2	30	86	8	89	49	3	7	40	1.47
866941--866986	24	1.9	24	82	8	58	34	13	2	50	1.53
867081--867215	14	9.8	14	70	26	76	51	0	5	41	1.31
867077--867158	16	4.9	18	74	21	56	53	0	7	39	1.29
867087--867124	2	19.0	2	100	0	76	50	0	0	50	1.00
867119--867185	18	4.3	16	83	16	88	55	0	8	35	1.32
867091--867185	14	6.3	15	84	12	90	53	0	6	40	1.26
867181--867241	21	3.0	21	72	18	67	44	3	1	50	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
867182--867241	18	3.1	19	75	15	61	45	3	1	50	1.28
871889--871962	37	2.0	38	83	2	96	31	8	4	56	1.47
873358--873395	19	2.1	19	85	5	51	18	5	5	71	1.25
876100--876164	18	3.7	18	91	2	105	33	7	30	27	1.85
887991--888023	2	16.5	2	100	0	66	51	0	0	48	1.00
893015--893043	12	2.5	12	94	5	51	27	0	10	62	1.28
892963--893160	75	2.6	75	81	6	215	28	4	13	53	1.59
893258--893297	12	3.3	12	100	0	80	7	50	17	25	1.72
893258--893303	24	1.9	24	90	0	74	8	47	17	26	1.76
894004--894037	17	1.9	18	88	5	52	50	5	0	44	1.26
895035--895065	13	2.4	13	100	0	62	25	19	29	25	1.99
899462--899506	22	2.0	22	100	0	90	22	8	26	42	1.83
899716--899766	22	2.4	22	87	6	70	31	11	31	25	1.92
900417--900471	23	2.5	23	82	8	71	25	14	27	32	1.95
900833--900857	7	3.6	7	100	0	50	36	0	16	48	1.46
906361--906443	16	5.2	16	77	8	80	50	32	10	6	1.62
906361--906451	32	2.9	31	79	9	114	52	30	9	6	1.60
906527--906563	3	11.7	3	88	11	56	32	2	0	64	1.07
907062--907177	46	2.5	46	84	5	153	43	18	14	22	1.87
907075--907199	46	2.7	46	87	0	160	42	22	16	19	1.89
907192--907278	32	2.8	32	78	5	97	37	29	14	17	1.90
908759--908803	22	2.1	21	87	4	63	48	11	2	37	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
913179--913267	27	3.4	27	83	6	103	21	24	22	31	1.98
913221--913277	25	2.3	25	93	0	96	31	22	15	29	1.95
913350--913381	16	2.0	16	93	0	55	65	0	6	28	1.16
913340--913395	3	18.3	3	78	10	60	62	0	7	30	1.22
914164--914229	29	2.3	30	89	5	93	56	6	3	34	1.40
917268--917313	20	2.3	21	81	11	60	39	21	2	36	1.66
920725--920798	24	3.2	24	81	9	91	25	4	20	50	1.66
934571--934617	20	2.3	21	75	17	55	34	0	0	65	0.93
938852--938894	22	2.0	22	95	0	77	39	0	2	58	1.11
943135--943398	139	1.9	138	92	0	438	45	8	8	37	1.66
943518--944052	181	3.0	177	74	7	484	38	11	11	39	1.77
943345--944052	181	3.9	179	73	10	442	41	10	10	38	1.73
944202--944234	15	2.2	15	94	0	57	51	6	6	36	1.51
945363--945459	48	2.0	48	100	0	194	40	8	16	35	1.78
954179--954297	39	3.1	39	76	12	111	47	0	14	36	1.50
954704--954751	14	3.5	14	77	5	62	52	4	4	39	1.40
954717--954759	13	3.2	13	74	6	50	48	2	2	46	1.27
954700--954759	27	2.3	27	97	2	113	48	3	3	45	1.35
958855--958916	3	21.7	3	76	15	60	59	0	3	37	1.13
958855--958916	8	7.2	9	78	12	60	59	0	3	37	1.13
958870--958935	31	2.1	31	88	5	98	54	0	1	43	1.09
960509--960570	24	2.6	23	92	5	97	41	11	30	16	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
962971--963080	31	3.5	31	92	0	184	20	19	20	40	1.92
963576--963618	21	2.0	21	82	8	52	32	4	13	48	1.63
967340--967405	31	2.1	31	100	0	132	18	18	22	40	1.91
967349--967452	47	2.1	50	91	8	169	18	17	24	40	1.91
967401--967495	30	3.3	31	87	10	130	18	17	22	41	1.91
967428--967510	30	2.7	30	87	5	87	21	18	24	36	1.95
967991--968033	21	2.0	21	82	8	52	32	4	13	48	1.63
968446--968500	26	2.1	27	82	3	67	23	3	14	58	1.52
969369--969784	83	5.0	82	79	5	381	30	14	17	36	1.90
969408--969784	166	2.3	166	83	3	456	30	15	16	37	1.89
971589--972508	462	2.0	459	96	0	1714	20	22	20	36	1.95
977844--977884	20	2.0	20	85	0	55	34	17	21	26	1.95
979670--980073	114	3.5	113	86	4	526	40	14	6	38	1.73
980729--980780	25	2.1	25	88	0	77	25	1	13	59	1.44
981216--981261	17	2.6	17	89	3	65	47	4	0	47	1.21
985043--985113	31	2.3	31	90	2	108	43	23	4	28	1.72
985055--985113	31	1.9	31	96	0	109	37	25	5	32	1.78
985463--985514	2	26.0	2	100	0	104	50	0	0	50	1.00
986421--986482	29	2.1	29	91	5	99	32	8	29	30	1.86
987145--987201	21	2.8	20	76	12	62	31	1	3	63	1.22
991093--991224	64	2.0	65	89	1	203	18	7	19	54	1.67
997964--998110	46	3.2	46	88	0	222	25	11	22	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
999149--999222	31	2.4	31	86	0	94	44	21	5	28	1.74
999324--999369	24	1.9	24	86	0	65	34	19	26	19	1.96
999333--999380	24	2.0	24	84	8	62	35	20	25	18	1.95
999369--999461	23	4.0	23	74	0	69	40	25	16	17	1.89
1000233--1000281	20	2.5	20	86	0	62	30	16	10	42	1.81
1003757--1004366	265	2.4	256	87	6	859	26	12	20	40	1.87
1006419--1006451	16	2.1	16	94	0	57	39	15	0	45	1.46
1006820--1006880	31	2.0	31	83	0	77	45	19	4	29	1.71
1006828--1006892	31	2.1	31	85	5	87	44	18	6	30	1.74
1006999--1007050	24	2.2	24	86	6	70	40	17	23	19	1.91
1007052--1007122	23	3.1	23	72	0	70	38	25	16	19	1.93
1007291--1007367	37	2.2	36	81	11	88	48	16	7	27	1.74
1008075--1008112	19	1.9	19	85	15	51	42	34	0	23	1.55
1010944--1011035	44	2.1	44	97	0	175	36	2	11	48	1.52
1010944--1011018	25	3.2	25	63	27	65	36	1	13	49	1.50
1011131--1011179	22	2.2	22	85	10	64	55	10	20	14	1.68
1011807--1011856	21	2.4	21	93	0	82	2	42	16	40	1.59
1019312--1019391	30	2.7	29	88	9	117	28	3	2	65	1.23
1019305--1019512	30	6.8	31	72	17	102	36	5	1	56	1.34
1019490--1019560	35	2.0	36	83	2	90	43	2	0	53	1.15
1019695--1019819	59	2.1	60	84	1	171	47	0	8	43	1.40
1019722--1019854	30	4.5	31	71	16	104	51	0	6	41	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1019722--1019823	30	3.4	31	74	6	111	50	0	7	41	1.31
1019842--1019890	23	2.2	23	96	3	91	59	0	6	34	1.22
1019961--1019998	2	19.0	2	100	0	76	50	0	0	50	1.00
1030056--1030120	21	3.1	21	78	10	62	38	15	30	15	1.88
1030154--1030218	33	2.0	33	87	3	96	27	0	47	24	1.52
1032007--1032055	19	2.6	19	93	0	80	30	2	10	57	1.43
1032174--1033533	199	6.9	198	96	1	2450	36	15	16	31	1.90
1032174--1033533	197	6.9	199	96	1	2490	36	15	16	31	1.90
1034995--1035059	12	5.4	12	94	0	85	35	9	33	21	1.85
1034995--1035068	24	3.0	24	84	6	85	36	8	33	21	1.83

Tables:   1   2   3   4   5   6   7   8   9   10