genome.fa.s7801.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007801.1 Hibiscus syriacus cultivar Beakdansim tig00110118_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  951604

Tables:   1   2   3   4   5   

This is table  1  of  5  ( 548 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1884--1929	13	3.5	13	90	0	74	34	15	19	30	1.93
1875--1929	26	2.1	26	82	0	65	36	16	20	27	1.93
2639--2708	36	2.0	36	94	2	124	34	11	17	37	1.85
10069--10102	2	17.0	2	100	0	68	50	0	0	50	1.00
12840--12918	3	26.3	3	100	0	158	32	0	67	0	0.91
13118--13146	12	2.3	13	94	5	51	24	6	20	48	1.74
15326--15374	24	2.0	24	84	7	64	26	2	12	59	1.44
21522--21581	24	2.4	24	73	13	59	11	18	1	68	1.28
24867--24916	24	2.1	24	85	7	66	26	2	12	60	1.43
30634--30675	22	2.0	21	90	4	66	35	0	0	64	0.94
37708--37771	22	3.0	22	74	2	58	40	29	9	20	1.84
49384--49427	15	2.9	15	82	0	61	34	22	15	27	1.95
49430--49464	18	1.9	18	88	0	52	71	8	8	11	1.31
49441--49499	17	3.2	17	77	15	57	71	6	5	16	1.26
49547--49647	7	13.0	7	72	21	53	75	6	0	16	1.07
49558--49613	9	6.2	9	78	0	58	76	8	0	14	1.00
49553--49606	27	2.0	28	88	3	83	77	7	0	14	0.97
49542--49616	27	2.9	25	78	7	78	77	9	0	13	0.99
49625--49649	4	6.2	4	100	0	50	76	0	0	24	0.80
50329--50790	165	2.8	164	86	3	610	34	4	33	27	1.77
51392--51444	23	2.3	24	78	12	58	33	0	9	56	1.32
51482--51590	8	13.5	8	71	12	71	33	1	9	55	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51480--51590	23	4.6	23	75	11	89	34	1	9	54	1.42
51353--51549	95	2.1	96	88	6	294	34	2	8	55	1.43
51479--51602	15	8.9	14	70	21	57	33	1	9	55	1.42
51530--51567	10	4.1	10	80	19	55	39	0	7	52	1.31
51537--51576	17	2.5	15	92	8	62	40	0	7	52	1.30
53960--53996	14	2.6	14	82	0	56	56	0	0	43	0.99
55050--55103	3	17.7	3	92	3	81	37	0	0	62	0.95
55298--55342	22	2.0	22	86	0	63	26	33	17	22	1.96
56325--56388	25	2.5	27	80	12	73	28	3	4	64	1.29
56380--56424	3	15.0	3	100	0	90	33	0	0	66	0.92
56669--56698	15	2.0	15	93	0	51	30	0	0	70	0.88
57241--57296	27	2.2	25	83	6	67	33	3	1	60	1.24
57240--57298	29	2.2	26	80	14	66	32	3	1	62	1.21
57287--57319	17	1.9	17	88	11	50	27	0	0	72	0.85
58160--58231	36	2.0	36	86	0	99	38	19	12	29	1.88
58835--58879	21	2.1	21	87	0	63	20	15	6	57	1.60
58845--58886	7	6.1	7	81	13	52	16	14	9	59	1.60
62827--62855	5	5.8	5	100	0	58	0	17	62	20	1.33
67148--67359	54	3.9	54	90	2	327	37	14	22	26	1.92
68157--68913	112	6.7	112	90	3	1108	36	16	21	25	1.93
69275--69382	3	36.0	3	87	7	157	32	0	0	66	0.98
69648--69692	22	2.0	22	86	0	63	26	33	17	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69661--69736	35	2.2	35	97	0	143	30	30	21	18	1.97
70608--70636	9	3.3	9	95	4	51	62	0	0	37	0.96
70371--70646	146	1.9	148	81	7	339	40	5	7	46	1.54
71281--71324	22	2.0	23	81	4	54	36	4	6	52	1.49
72335--72368	16	2.1	17	88	5	52	55	11	14	17	1.68
73179--73228	24	2.1	24	88	7	75	52	14	4	30	1.59
82428--82487	30	2.0	30	83	6	77	33	0	3	63	1.11
83513--83624	20	6.0	20	71	14	69	44	15	5	34	1.69
83505--83604	52	1.9	51	91	2	164	47	14	6	33	1.68
88219--88278	20	3.0	20	95	0	102	40	20	5	35	1.74
91373--91417	23	2.0	23	82	4	56	62	2	2	33	1.20
91415--91496	16	5.1	17	70	14	57	63	6	1	29	1.26
102680--102747	3	22.0	3	87	3	91	60	0	0	39	0.97
102898--103177	124	2.3	120	86	6	363	24	17	17	40	1.90
103183--103345	85	1.9	85	97	0	308	31	17	14	35	1.91
103423--103526	40	2.6	40	87	6	165	19	25	7	48	1.75
103259--103750	269	1.8	269	91	0	806	29	18	14	37	1.90
103307--103637	153	2.1	155	87	5	463	26	20	12	40	1.88
103463--103870	113	3.6	113	89	2	611	28	17	15	38	1.90
104682--105246	92	6.1	92	97	0	1051	34	21	15	28	1.94
113912--113943	15	2.1	15	94	0	55	46	9	18	25	1.79
118709--118776	3	22.0	3	84	3	82	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121635--121676	20	2.2	19	86	4	57	64	2	0	33	1.07
121854--121883	3	10.0	3	92	0	51	63	0	3	33	1.11
123260--123348	18	4.7	18	77	15	74	62	1	0	35	1.02
123272--123341	3	23.7	3	81	18	85	67	0	0	32	0.91
123736--124683	113	8.4	113	91	2	1379	28	18	16	37	1.92
123736--124683	220	4.2	222	90	3	1344	28	18	16	37	1.92
126213--126257	19	2.3	20	88	3	65	0	17	0	82	0.68
126207--126256	9	5.4	9	81	9	57	0	16	0	84	0.63
133497--133528	15	2.1	15	94	0	55	46	9	18	25	1.79
135520--136616	548	2.0	547	99	0	2167	27	23	16	32	1.96
137277--137341	21	3.1	20	78	12	60	67	1	3	27	1.14
137949--137990	20	2.2	19	86	4	57	64	2	0	33	1.07
138168--138197	3	10.0	3	92	0	51	63	0	3	33	1.11
139581--139647	3	22.7	3	82	8	75	64	0	0	35	0.94
141485--141532	17	2.8	17	83	0	69	20	12	2	64	1.37
141799--141889	36	2.5	36	89	0	137	25	24	21	28	1.99
147522--147572	24	2.1	24	85	7	68	37	3	23	35	1.74
147606--147685	32	2.5	32	85	0	115	27	7	26	38	1.83
147702--147774	34	2.2	33	85	4	94	15	6	32	45	1.72
147715--147792	34	2.3	32	77	12	84	14	5	32	48	1.65
152501--152547	21	2.2	21	84	0	67	19	27	17	36	1.93
152543--152668	20	6.3	20	93	1	209	38	20	19	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
153504--153557	24	2.2	24	90	0	81	22	18	18	40	1.91
154444--154530	20	4.4	20	85	1	95	44	22	17	14	1.85
154545--154591	20	2.3	20	88	0	67	21	19	23	36	1.95
155162--155212	20	2.5	20	100	0	102	19	21	21	37	1.95
155209--155254	21	2.2	21	88	0	65	36	17	28	17	1.92
161362--161447	44	2.0	44	90	2	138	24	18	25	31	1.98
166627--166677	21	2.4	21	93	0	84	43	7	33	15	1.76
167529--167574	22	2.1	22	100	0	92	21	6	32	39	1.79
167653--167695	20	2.2	19	83	4	50	34	16	30	18	1.93
168270--168320	22	2.3	23	93	3	86	25	23	23	27	2.00
173968--174010	19	2.2	19	87	4	59	65	6	2	25	1.30
178204--178287	39	2.2	39	80	4	98	22	27	19	30	1.98
179136--179212	24	3.6	22	75	20	67	29	19	25	24	1.98
180009--180124	58	2.0	58	96	0	214	37	7	19	35	1.81
180352--180380	2	14.5	2	100	0	58	51	0	0	48	1.00
180860--180909	23	2.2	23	85	0	64	20	28	24	28	1.99
188371--188570	39	5.1	39	80	6	199	17	27	22	33	1.96
188839--188873	11	3.2	11	84	15	54	17	11	8	62	1.52
188954--188993	2	20.0	2	100	0	80	50	0	0	50	1.00
195984--196078	3	31.7	3	100	0	190	33	0	66	0	0.92
196396--196568	90	1.9	89	91	1	283	39	9	7	43	1.66
200593--200638	22	2.0	23	83	4	58	63	10	4	21	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
200793--201053	41	6.4	41	73	10	207	27	18	19	34	1.95
200874--201053	80	2.2	82	82	10	235	26	17	19	37	1.93
201298--201443	73	2.0	73	91	2	240	22	19	21	36	1.95
203846--204128	43	6.7	43	79	2	218	26	21	17	34	1.96
203848--204011	85	1.9	85	81	2	195	26	20	19	32	1.97
203949--204106	42	3.7	43	78	4	160	28	23	12	35	1.91
205029--205071	22	2.0	22	85	0	59	23	6	27	41	1.80
206130--206171	20	2.2	19	86	4	57	64	2	0	33	1.07
206039--206259	120	1.9	118	80	4	266	44	8	8	38	1.64
207270--207331	3	20.0	3	87	12	90	67	0	0	32	0.91

Tables:   1   2   3   4   5