genome.fa.s7801.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007801.1 Hibiscus syriacus cultivar Beakdansim tig00110118_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  951604

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 548 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
612340--613092	109	6.9	109	90	1	1116	28	19	17	33	1.95
617613--617948	81	4.1	81	84	0	359	28	22	11	37	1.89
618068--618655	54	10.8	54	90	2	901	27	20	18	32	1.97
618068--618655	109	5.4	109	92	2	941	27	20	18	32	1.97
619064--619200	20	6.7	22	67	23	77	24	26	16	32	1.96
619106--619219	21	5.5	21	71	12	110	27	24	18	29	1.98
619065--619220	41	3.8	41	93	4	255	25	25	17	32	1.97
619288--619319	16	2.0	16	100	0	64	31	31	6	31	1.82
624889--624924	18	2.0	18	88	0	54	30	8	19	41	1.81
628957--629013	27	2.1	28	96	3	107	43	21	7	28	1.78
630482--630519	20	1.9	20	100	0	76	71	7	10	10	1.32
630956--631025	35	2.0	35	91	0	113	41	10	10	38	1.72
632083--632115	10	3.3	10	95	0	57	24	3	9	63	1.38
634518--634580	31	2.0	31	93	0	108	52	12	15	19	1.74
636208--636244	12	3.2	12	84	7	58	64	21	0	13	1.27
636299--636382	33	2.6	32	74	18	84	59	15	7	17	1.58
637579--637612	16	2.1	16	88	0	50	50	0	5	44	1.26
655374--655434	31	2.0	31	90	0	95	42	21	14	21	1.88
655499--655584	29	3.2	27	68	20	72	25	26	20	26	1.99
655511--655547	17	2.2	17	100	0	74	27	32	16	24	1.96
655486--655577	11	8.5	11	69	15	50	26	25	21	27	2.00
655528--655596	35	2.0	35	88	0	102	28	26	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
656138--656186	27	1.9	25	88	12	73	57	18	0	24	1.41
656302--656357	22	2.5	22	100	0	112	30	12	25	32	1.92
656647--656680	15	2.3	15	94	0	59	41	0	41	17	1.50
656719--656751	17	1.9	17	88	11	50	12	12	18	57	1.64
657041--657102	7	8.9	7	83	0	52	48	29	1	20	1.59
657041--657105	14	4.6	14	78	0	58	47	29	1	21	1.60
657183--657212	14	2.1	14	93	0	51	43	0	6	50	1.28
668164--668251	35	2.5	34	75	5	86	52	12	4	30	1.59
673897--673956	30	2.0	30	96	0	111	35	23	18	23	1.96
678688--678777	30	3.0	30	95	0	144	33	21	20	25	1.97
687947--687982	14	2.5	15	90	4	56	41	5	11	41	1.64
688125--688178	20	2.6	20	75	16	56	40	0	1	57	1.09
688154--688205	14	3.6	14	71	5	50	42	0	0	57	0.98
688271--688318	23	2.1	23	92	0	78	43	0	0	56	0.99
688275--688343	23	3.0	23	82	6	68	46	0	0	53	1.00
688287--688342	8	7.2	8	75	13	55	42	0	0	57	0.99
688312--688449	54	2.5	54	80	15	158	47	2	1	49	1.22
688458--688508	23	2.2	23	89	6	77	45	0	1	52	1.12
688460--688506	18	2.6	19	83	6	53	42	0	2	55	1.12
688501--688556	22	2.5	24	82	8	73	57	0	0	42	0.99
688512--688577	22	2.9	23	82	10	66	51	0	0	48	1.00
688911--688999	25	3.5	26	68	13	67	46	7	1	44	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
688996--689042	23	2.0	24	83	4	60	53	0	4	42	1.20
689438--689491	20	2.6	20	75	16	56	40	0	1	57	1.09
689467--689518	14	3.6	14	71	5	50	42	0	0	57	0.98
689584--689631	23	2.1	23	92	0	78	43	0	0	56	0.99
689588--689656	23	3.0	23	82	6	68	46	0	0	53	1.00
689600--689655	8	7.2	8	75	13	55	42	0	0	57	0.99
689625--689762	54	2.5	54	80	15	158	47	2	1	49	1.22
689771--689821	23	2.2	23	89	6	77	45	0	1	52	1.12
689773--689819	18	2.6	19	83	6	53	42	0	2	55	1.12
689814--689869	22	2.5	24	82	8	73	57	0	0	42	0.99
689825--689890	22	2.9	23	82	10	66	51	0	0	48	1.00
690236--690312	25	3.0	26	67	12	70	49	6	2	41	1.42
690324--690364	18	2.3	19	83	12	59	63	0	0	36	0.95
690645--691008	37	10.1	37	80	13	404	44	2	8	43	1.49
690756--690899	63	2.2	67	86	4	206	43	2	7	46	1.44
690812--690868	26	2.2	26	90	6	89	42	5	8	43	1.58
690818--691008	73	2.5	76	87	9	277	43	2	7	45	1.46
691067--691120	24	2.2	25	87	9	76	14	5	3	75	1.12
696997--697077	22	3.6	22	86	3	108	19	25	30	23	1.98
708476--708744	37	6.9	37	83	9	333	45	3	8	42	1.50
708530--708620	47	2.0	46	84	2	119	47	4	6	41	1.49
708714--708768	26	2.2	25	87	6	85	54	0	5	40	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
708844--708881	18	2.1	18	90	9	60	13	2	5	78	1.02
711876--711905	15	1.9	16	93	6	53	20	0	70	10	1.16
713423--713674	107	2.3	107	82	2	281	25	12	15	47	1.80
713494--713695	107	1.9	106	84	1	269	26	13	16	44	1.84
715581--715613	15	2.3	15	89	5	50	69	6	15	9	1.34
716656--716703	22	2.2	22	84	0	60	56	4	14	25	1.56
719361--719397	19	1.9	19	100	0	74	24	0	5	70	1.08
721217--721295	22	3.8	21	76	14	65	21	2	6	69	1.23
722685--722730	21	2.2	21	84	0	56	30	30	26	13	1.93
722754--722802	22	2.2	22	78	7	55	32	28	28	10	1.90
723709--723833	31	4.0	31	94	2	207	20	19	23	37	1.94
726965--727010	21	2.2	21	84	0	56	30	30	26	13	1.93
727034--727075	22	2.0	22	85	4	59	28	35	28	7	1.84
727992--728147	31	5.0	31	94	1	260	19	19	23	37	1.95
729979--730015	19	1.9	19	94	0	65	24	0	2	72	0.97
734592--734658	3	22.3	3	82	11	84	61	0	0	38	0.96
734920--735576	113	5.8	113	86	6	818	28	18	15	37	1.91
735985--736039	22	2.5	22	87	0	83	36	14	14	34	1.87
744265--744319	14	3.9	14	85	2	65	52	9	14	23	1.70
744431--744516	43	2.0	43	88	0	127	34	23	10	31	1.88
747878--747941	3	21.3	3	81	12	78	60	0	0	39	0.97
747884--747949	12	5.6	12	84	12	75	62	0	0	37	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
748974--749006	15	2.1	16	88	5	50	57	0	3	39	1.14
750294--750387	42	2.2	42	86	0	125	41	8	5	44	1.57
765875--765921	2	23.0	2	95	4	85	48	0	2	48	1.13
772265--772333	27	2.6	27	84	9	79	31	10	15	42	1.81
772863--772903	2	20.5	2	100	0	82	48	0	0	51	1.00
775675--775863	83	2.3	83	81	5	213	32	15	15	36	1.89
775760--776115	83	4.3	82	77	7	319	30	16	16	36	1.91
775814--776111	163	1.8	164	85	2	420	31	16	17	34	1.92
780035--780110	30	2.5	30	81	10	82	39	15	2	42	1.61
781483--781512	3	10.0	3	100	0	60	66	0	33	0	0.92
785774--785805	15	2.1	16	88	11	50	65	6	3	25	1.31
787133--787180	23	2.1	22	88	3	69	47	0	6	45	1.27
788135--788190	21	2.7	20	81	8	58	46	10	14	28	1.78
790462--790530	23	3.0	22	77	6	75	26	15	23	34	1.95
792202--792463	125	2.1	125	84	1	337	38	18	11	30	1.87
794462--794505	23	2.0	22	86	4	61	47	6	2	43	1.42
797482--797535	22	2.5	22	82	8	58	66	3	9	20	1.35
798908--798971	33	1.9	33	90	0	101	29	25	10	34	1.90
813484--813801	158	2.0	157	97	1	602	29	24	16	29	1.97
816426--816487	26	2.3	26	97	2	115	11	38	22	27	1.88
828443--828486	21	2.1	21	95	0	79	18	15	11	54	1.70
837872--837909	19	2.1	18	90	5	58	31	0	15	52	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
838274--838368	44	2.2	44	81	11	106	27	17	24	30	1.97
843390--843425	11	3.4	11	96	3	65	8	25	8	58	1.55
845245--845421	43	4.1	43	74	2	142	27	20	23	28	1.99
845573--845723	44	3.5	43	80	8	157	31	17	22	28	1.97
846044--846102	21	2.8	21	79	5	66	6	27	18	47	1.74
846109--846158	21	2.4	21	86	0	64	4	40	18	38	1.69
850617--850689	22	3.4	21	90	7	112	32	16	6	43	1.74
851266--851459	79	2.4	79	81	5	212	32	17	18	31	1.94
851403--851539	40	3.3	40	71	14	109	34	22	15	27	1.94
853543--853620	35	2.2	35	90	0	120	50	6	1	42	1.36

Tables:   1   2   3   4   5