genome.fa.s7801.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007801.1 Hibiscus syriacus cultivar Beakdansim tig00110118_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  951604

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 548 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
419567--419591	2	12.5	2	100	0	50	52	0	0	48	1.00
419862--419896	18	1.9	18	94	0	61	28	28	20	22	1.98
426436--426478	2	21.5	2	95	0	77	53	0	0	46	1.00
426729--426801	18	3.9	18	77	7	74	31	30	17	20	1.96
426728--426804	38	2.0	38	89	0	118	31	28	18	22	1.97
427377--427512	64	2.1	64	80	8	143	28	18	19	33	1.95
427415--427535	64	1.9	64	84	3	163	27	17	19	35	1.94
431724--431811	16	5.5	15	71	20	54	63	2	2	31	1.19
431724--431838	17	7.1	16	73	17	78	62	1	3	32	1.22
432222--432267	23	1.9	25	83	16	62	19	0	10	69	1.17
432246--432277	17	1.9	16	93	6	55	12	0	12	75	1.06
432752--432814	24	2.6	24	82	12	67	38	0	6	55	1.25
435611--435693	28	2.9	28	75	10	71	57	10	12	19	1.63
436841--436911	2	36.0	2	97	2	135	49	0	0	50	1.00
437494--437978	85	5.7	85	82	3	557	27	18	19	34	1.95
437522--437988	170	2.7	171	84	2	616	26	18	18	36	1.94
438059--438282	124	1.8	124	87	1	333	25	13	22	37	1.91
438368--438787	64	6.6	64	90	2	648	28	13	21	36	1.91
439534--439794	95	2.7	95	86	3	344	32	17	16	32	1.93
442197--442225	12	2.3	13	94	5	51	62	0	0	37	0.96
442447--442529	28	2.9	28	75	10	71	57	10	12	19	1.63
443518--443581	29	2.2	30	85	2	85	31	26	4	37	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
447180--447266	29	3.0	29	94	3	158	49	13	12	24	1.77
447180--447266	28	3.1	28	96	1	156	49	13	12	24	1.77
451755--451812	28	2.0	29	96	3	109	48	13	13	24	1.79
462958--463047	32	2.9	30	78	12	101	36	21	14	27	1.92
467995--468025	2	15.5	2	100	0	62	48	0	0	51	1.00
470260--470292	15	2.1	16	88	5	50	36	0	6	57	1.23
470948--471034	2	43.5	2	97	0	165	49	1	0	49	1.08
471106--471138	2	16.5	2	93	0	57	54	0	0	45	0.99
471296--471328	18	1.9	17	88	11	50	69	12	0	18	1.18
472845--472885	13	3.2	13	82	0	55	68	0	2	29	1.03
472841--472886	16	2.9	16	83	3	58	65	0	2	32	1.05
473342--473448	29	3.7	29	91	0	169	31	25	9	33	1.88
473725--473763	10	3.9	10	96	0	69	20	35	0	43	1.52
473721--473780	10	6.0	10	86	0	66	25	31	0	43	1.55
473721--473770	20	2.5	20	86	0	73	26	34	0	40	1.56
473794--473853	16	3.9	15	74	12	50	30	0	1	68	0.99
481206--481259	21	2.5	22	79	8	67	24	40	3	31	1.72
484421--484471	27	2.0	25	81	14	59	31	23	9	35	1.87
486286--486338	21	2.5	22	78	6	63	24	37	3	33	1.74
487863--487897	14	2.3	16	90	9	56	68	0	8	22	1.16
487807--487923	17	6.6	17	66	18	60	70	2	5	20	1.20
488491--488559	34	2.0	34	91	0	111	31	13	11	43	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
489155--489412	98	2.6	97	80	6	257	19	20	25	34	1.96
489155--489546	105	3.8	102	77	7	307	20	20	25	33	1.97
491134--491185	15	3.6	14	85	15	70	0	13	7	78	0.94
495592--495626	16	2.1	18	89	10	56	65	0	8	25	1.21
495636--495687	20	2.7	20	75	3	61	67	1	5	25	1.23
495738--495830	32	2.9	30	78	12	87	61	6	4	27	1.40
496220--496288	34	2.0	34	94	0	120	31	14	11	42	1.82
506962--507012	20	2.5	20	90	6	77	45	9	19	25	1.81
507164--507244	37	2.2	38	78	17	89	51	3	1	43	1.27
509291--509457	60	2.8	60	81	11	182	31	19	5	43	1.73
510892--510978	34	2.5	34	88	5	122	40	4	8	47	1.54
514254--514305	20	2.5	21	87	3	70	40	17	21	21	1.91
514254--514508	41	6.3	40	72	10	185	34	20	19	25	1.96
514212--514387	21	8.5	21	69	9	76	28	21	17	32	1.96
514377--514490	20	5.7	20	88	2	174	39	19	21	20	1.93
514239--514513	61	4.5	63	72	11	205	33	20	18	27	1.96
515038--515119	33	2.5	33	87	2	119	43	23	21	10	1.84
515059--515127	33	2.1	33	88	0	102	46	24	18	10	1.80
515131--515238	20	5.8	19	78	14	118	12	22	18	46	1.83
516889--517104	94	2.3	94	97	0	405	21	12	18	46	1.82
518965--518995	14	2.3	14	94	5	55	35	0	22	41	1.54
519102--519162	19	3.5	19	70	21	60	44	19	22	13	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
519120--519176	14	3.7	14	70	20	51	43	21	24	10	1.83
519102--519181	33	2.4	33	93	0	142	45	20	23	11	1.83
519193--519316	33	3.8	33	89	2	187	12	20	18	48	1.80
519193--519316	65	1.9	66	91	1	205	12	20	18	48	1.80
519300--519343	20	2.3	19	84	11	54	22	22	18	36	1.95
519310--519382	20	3.6	20	68	17	60	24	19	23	32	1.97
521642--521666	12	2.1	12	100	0	50	0	28	0	72	0.86
521835--521888	24	2.3	23	87	6	81	38	20	16	24	1.92
522624--522798	20	8.7	20	86	3	190	24	18	26	30	1.98
522604--522819	61	3.6	61	77	5	206	23	19	24	32	1.98
522828--522880	21	2.5	20	85	8	79	33	16	26	22	1.96
524534--524611	22	3.5	22	89	0	111	28	21	19	30	1.97
525663--526084	54	7.8	54	87	2	573	33	17	16	31	1.93
529511--529717	75	2.8	77	86	5	273	24	31	23	20	1.98
534380--534419	21	1.9	21	89	0	62	25	40	25	10	1.86
536612--536684	30	2.3	30	86	6	101	41	4	16	38	1.67
536993--537201	76	2.7	77	85	3	262	24	32	22	20	1.98
541193--541275	40	2.1	40	100	0	166	33	12	7	46	1.68
544365--544399	16	2.2	16	94	0	61	42	17	14	25	1.86
545088--545127	18	2.4	17	87	8	55	30	5	17	47	1.69
555208--555276	19	3.7	20	71	13	65	57	10	13	18	1.63
555201--555285	37	2.3	37	91	2	136	62	8	10	18	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
563931--564105	93	1.9	93	85	2	244	30	17	23	29	1.97
563921--564133	93	2.3	93	78	3	241	29	19	21	29	1.98
563847--564267	227	1.9	227	83	4	553	28	18	22	29	1.97
564036--564352	134	2.4	133	85	3	411	29	18	23	29	1.98
566260--566306	11	4.4	11	81	5	60	0	14	2	82	0.75
567825--567878	19	2.9	18	83	8	65	59	0	16	24	1.37
567829--567880	9	5.9	8	82	13	50	59	0	17	23	1.37
567829--567878	18	2.8	17	85	11	64	62	0	16	22	1.33
573636--573671	18	2.0	18	88	0	54	30	8	16	44	1.77
573874--573907	13	2.6	13	85	0	50	55	0	11	32	1.36
578748--578784	16	2.3	16	85	0	56	37	13	8	40	1.74
578749--578801	16	3.3	16	81	0	52	33	16	11	37	1.85
579447--579509	32	2.0	32	93	0	108	28	6	17	47	1.72
582756--582983	81	2.8	81	89	0	330	31	21	12	34	1.91
583238--583300	32	2.0	32	96	0	117	28	6	15	49	1.69
585246--585308	32	2.0	32	93	0	108	28	1	19	50	1.56
586587--587123	81	6.6	81	89	0	734	32	21	11	34	1.89
587179--587220	21	2.0	21	85	4	57	59	7	2	30	1.37
587532--587713	94	1.9	95	88	3	278	24	22	12	40	1.89
591780--591817	19	2.0	19	89	0	58	34	10	13	42	1.78
594979--595005	13	2.1	13	100	0	54	7	14	14	62	1.51
599485--599580	22	4.2	22	70	7	84	37	0	10	52	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
599393--599540	15	9.5	15	82	10	181	45	0	2	51	1.15
599590--599707	32	3.7	32	97	0	218	33	0	12	53	1.39
599614--599670	18	3.4	18	67	18	59	31	0	14	54	1.40
599520--599787	144	1.9	144	94	0	473	33	0	12	53	1.39
599767--599809	22	2.0	22	90	0	68	37	0	9	53	1.33
599834--599892	31	1.9	31	92	0	100	42	10	6	40	1.65
605321--605359	20	2.0	20	84	0	51	23	7	23	46	1.78
605518--605590	22	3.3	23	79	9	73	15	21	39	23	1.91
611860--612200	87	4.0	86	80	7	345	28	24	11	35	1.91
612323--613092	54	14.1	54	85	2	977	28	19	18	33	1.95

Tables:   1   2   3   4   5