genome.fa.s7801.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007801.1 Hibiscus syriacus cultivar Beakdansim tig00110118_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  951604

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 548 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
853832--853879	19	2.6	18	80	9	51	66	8	0	25	1.19
855301--855330	3	10.0	3	92	0	51	63	0	0	36	0.95
856892--856950	3	20.0	3	96	3	111	33	0	66	0	0.92
858437--858474	15	2.5	15	86	0	58	28	21	21	28	1.98
859578--859602	13	1.9	13	100	0	50	16	52	16	16	1.76
870690--870731	21	2.0	21	85	0	57	30	21	19	28	1.97
875201--875246	21	2.2	20	85	11	58	15	13	0	71	1.14
877221--877247	13	2.1	13	100	0	54	37	11	14	37	1.82
882458--882482	11	2.3	11	100	0	50	36	0	28	36	1.58
884061--884131	35	2.0	35	100	0	142	38	5	16	39	1.73
888565--888635	28	2.4	29	84	9	92	33	19	21	25	1.97
891225--891522	36	8.2	37	80	13	309	45	4	5	44	1.46
891253--891352	30	3.0	30	75	21	110	41	2	6	51	1.38
891467--891554	28	2.9	29	81	13	97	51	5	4	38	1.46
891606--891654	18	2.5	20	77	19	57	22	0	6	71	1.08
891621--891658	18	2.1	18	90	0	58	23	0	2	73	0.95
892013--892042	15	1.9	16	93	6	53	66	30	3	0	1.07
892793--892828	18	2.0	18	88	0	54	25	16	13	44	1.85
892846--892934	20	4.5	20	74	13	94	32	28	15	23	1.95
893753--893806	24	2.2	24	90	0	81	22	18	16	42	1.89
894006--894032	14	1.9	14	100	0	54	44	29	18	7	1.77
896064--896098	18	1.9	18	94	0	61	54	25	0	20	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
896269--896344	20	3.8	21	92	3	106	32	23	17	26	1.96
896277--896513	20	12.4	20	79	10	255	35	23	17	24	1.95
896277--896493	74	2.9	74	90	0	353	35	23	17	24	1.95
896371--896473	54	1.9	54	87	0	152	36	24	16	22	1.94
896351--896563	94	2.3	94	85	2	268	35	22	17	24	1.95
896661--896818	63	2.4	65	91	6	248	51	16	2	29	1.58
896771--896832	14	4.3	14	79	6	70	46	16	0	37	1.47
898213--898306	42	2.2	42	87	7	129	22	18	37	22	1.94
898213--898306	21	4.5	21	74	4	82	22	18	37	22	1.94
898234--898335	42	2.4	42	81	0	114	26	17	33	22	1.96
898809--898851	19	2.2	20	87	4	61	51	20	13	13	1.76
898838--898886	20	2.5	20	96	0	89	36	26	22	14	1.92
900955--901000	20	2.3	20	85	7	58	47	28	13	10	1.76
901378--901433	22	2.5	22	80	8	60	19	12	42	25	1.86
901726--901795	21	3.4	21	74	4	70	25	18	21	34	1.96
901778--901818	21	2.0	21	85	0	55	36	19	19	24	1.95
901869--901905	19	1.9	19	94	0	65	21	16	29	32	1.95
902031--902056	3	8.7	3	100	0	52	30	0	0	69	0.89
902082--902130	19	2.5	19	80	6	62	20	2	4	73	1.10
902120--902176	23	2.5	23	88	2	80	12	10	3	73	1.21
902136--902205	24	3.0	23	79	10	61	18	4	2	74	1.11
903591--903634	23	1.9	23	100	0	88	72	9	0	18	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
904247--904284	19	2.0	20	89	5	60	60	2	0	36	1.11
907239--907400	63	2.5	64	86	4	204	33	20	19	26	1.97
908446--908493	15	3.2	15	84	0	60	41	0	18	39	1.51
908928--908995	23	3.0	23	86	0	100	19	23	26	30	1.98
909319--909356	14	2.9	13	85	11	51	55	0	13	31	1.38
914508--914535	14	2.0	14	100	0	56	14	35	28	21	1.92
914660--914722	14	4.5	14	83	0	81	30	26	14	28	1.95
918079--918146	28	2.4	28	82	0	82	25	27	14	32	1.95
927795--927831	2	18.5	2	100	0	74	51	0	0	48	1.00
929176--929205	13	2.3	13	94	0	51	10	13	46	30	1.75
929826--929917	40	2.2	40	84	7	114	21	17	38	22	1.93
930159--930272	59	1.9	59	89	0	174	38	11	14	35	1.83
930845--930906	25	2.6	24	80	14	74	46	3	9	40	1.53
931586--931647	25	2.6	24	80	14	74	46	3	9	40	1.53
930423--931890	741	2.0	741	97	0	2783	32	13	16	36	1.88
935835--935877	13	3.2	13	81	18	61	51	13	20	13	1.76
935837--935876	21	2.0	20	85	5	53	47	15	22	15	1.82
935835--935876	12	3.2	12	84	15	57	50	14	21	14	1.78
936595--936656	32	1.9	32	96	0	115	59	9	14	16	1.60
938372--938406	2	17.5	2	100	0	70	51	0	0	48	1.00
939283--939314	8	4.2	8	92	7	50	6	12	0	81	0.87
940361--940527	50	3.3	50	79	5	167	47	14	10	26	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
940338--940527	101	1.9	99	81	4	229	47	14	10	27	1.76
945960--946310	81	4.3	81	87	3	492	34	12	21	31	1.91

Tables:   1   2   3   4   5

The End!