genome.fa.s7808.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007808.1 Hibiscus syriacus cultivar Beakdansim tig00110129_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1698870

Tables:   1   2   3   4   5   6   7   

This is table  2  of  7  ( 791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
333902--333943	14	2.6	16	78	21	52	33	2	0	64	1.07
333899--333978	25	3.2	24	75	17	74	31	2	3	62	1.26
334028--334080	27	2.0	26	85	10	72	22	1	5	69	1.19
347558--347604	21	2.2	21	77	7	51	19	8	2	70	1.24
351716--351804	32	2.8	31	81	3	115	29	11	19	40	1.86
352399--352595	106	1.9	106	82	0	250	35	24	15	24	1.95
352803--352918	36	3.2	36	78	4	117	29	23	12	35	1.91
352867--353047	67	2.7	67	84	4	226	31	21	8	38	1.84
353633--353871	110	2.2	110	85	4	317	35	25	16	22	1.95
355210--355308	18	5.6	17	79	18	89	34	3	1	61	1.18
355214--355284	32	2.2	33	80	12	85	30	2	0	66	1.06
355260--355319	2	31.0	2	77	12	54	40	1	3	55	1.27
365169--365232	26	2.5	26	83	14	80	9	15	4	70	1.30
365846--365886	21	2.0	20	85	4	55	82	0	2	14	0.76
365964--365997	16	2.3	14	90	10	50	82	2	2	11	0.89
366040--366066	12	2.2	12	100	0	54	62	0	14	22	1.31
366131--366173	18	2.4	18	88	0	59	69	0	6	23	1.12
373742--373787	24	1.9	24	86	0	65	26	30	4	39	1.75
377762--377803	14	2.8	15	77	22	52	14	9	0	76	1.02
399162--399605	55	8.1	55	89	1	642	29	17	16	36	1.92
401460--401560	19	5.6	17	77	18	80	1	18	0	78	0.91
401474--401597	14	9.2	13	72	18	85	4	15	1	79	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
401459--401614	37	4.2	36	77	13	124	3	16	1	78	0.97
401475--401611	44	2.8	48	75	16	129	3	16	1	78	0.96
401493--401608	44	2.7	43	79	13	132	4	14	0	80	0.92
401459--401614	21	7.0	22	73	15	87	3	16	1	78	0.97
401500--401598	15	6.9	13	76	13	81	5	13	1	80	0.92
402972--403060	31	2.8	32	72	5	92	46	10	8	34	1.69
407957--408564	133	4.6	133	85	4	757	33	19	18	28	1.96
409348--409392	14	3.2	14	75	12	56	68	2	6	22	1.24
410897--411010	53	2.2	52	85	6	158	35	16	7	41	1.76
411294--411372	3	27.0	3	72	16	51	60	1	3	34	1.23
411669--411711	18	2.4	17	85	11	59	34	4	6	53	1.49
411940--412016	21	3.5	23	83	5	72	35	20	15	28	1.94
412215--412542	45	7.7	45	84	3	321	41	16	14	27	1.87
412388--413005	38	15.9	38	81	4	653	39	16	17	27	1.91
412388--413040	194	3.4	193	82	4	803	38	16	17	26	1.92
415206--415268	9	7.6	9	72	16	64	1	19	0	79	0.82
415206--415271	16	4.1	16	79	12	82	1	19	0	78	0.82
415206--415297	17	5.6	17	74	18	79	4	19	0	76	0.96
415207--415270	33	1.9	34	90	3	103	1	20	0	78	0.84
415204--415297	33	2.8	33	80	9	102	5	19	0	75	0.99
415208--415295	25	3.7	23	77	21	74	4	19	0	76	0.96
419739--419811	24	3.2	24	68	18	73	36	6	23	32	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
424503--424535	3	11.0	3	93	0	57	63	0	3	33	1.10
424573--424614	13	3.2	13	77	12	50	59	0	0	40	0.97
425649--425817	86	2.0	87	90	1	268	37	13	11	37	1.80
430807--430836	15	1.9	16	93	6	53	56	0	0	43	0.99
430790--430833	17	2.4	18	81	7	54	52	2	2	43	1.26
441554--442250	54	12.9	54	89	1	1015	39	16	10	33	1.83
443378--443411	18	1.9	18	88	5	52	38	2	2	55	1.30
448193--448222	15	2.0	15	93	0	51	33	16	10	40	1.82
451312--451351	6	6.5	6	82	5	53	80	5	15	0	0.88
451315--451352	13	3.0	13	80	7	51	76	5	18	0	0.97
462931--462987	22	2.6	22	94	5	98	22	17	14	45	1.84
470586--470859	54	4.9	54	85	8	363	39	16	10	33	1.83
470626--470857	116	2.0	116	92	1	385	39	17	10	32	1.84
471249--471321	32	2.2	33	92	2	121	34	16	12	36	1.86
471762--471802	18	2.3	18	100	0	82	36	29	4	29	1.78
476526--476745	54	4.1	54	86	2	307	35	19	11	33	1.88
476778--477104	54	6.1	54	91	0	530	36	18	12	32	1.88
476580--476943	198	1.8	198	91	2	597	35	19	12	32	1.90
476502--476997	252	2.0	252	93	0	841	35	19	13	32	1.90
477437--477485	22	2.2	22	100	0	98	22	12	20	44	1.84
477445--477493	22	2.2	22	92	0	80	24	18	14	42	1.87
477502--477613	33	3.4	33	92	0	197	24	23	14	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
482236--482500	136	1.9	137	86	2	381	28	22	12	36	1.90
483583--483631	24	2.0	24	96	0	89	36	26	0	36	1.57
488651--488765	61	1.9	61	83	3	151	27	26	20	26	1.99
494252--494311	30	2.0	30	96	0	111	35	13	11	40	1.81
496207--496561	190	1.9	190	89	1	559	27	20	20	32	1.97
500702--500779	34	2.3	34	100	0	156	39	19	19	21	1.92
501204--501597	54	7.3	54	85	0	482	31	19	16	32	1.94
501209--501346	27	5.1	26	62	19	68	31	18	18	31	1.96
501203--501597	162	2.4	162	87	0	556	31	19	16	32	1.94
501590--501748	54	2.9	54	85	2	185	33	9	20	35	1.85
505170--505263	38	2.5	38	89	3	145	25	27	22	24	2.00
505170--505266	20	5.1	20	81	10	107	25	26	22	24	2.00
506228--506267	2	20.0	2	100	0	80	50	0	0	50	1.00
509822--510159	54	6.3	54	83	3	380	31	19	17	31	1.95
510542--510629	46	1.9	46	92	0	149	48	10	17	23	1.77
525544--525589	20	2.3	20	88	3	67	34	28	2	34	1.70
526517--526572	27	2.1	27	100	0	112	30	21	0	48	1.51
535848--535999	72	2.1	73	95	1	270	48	16	7	27	1.72
537489--537526	16	2.4	16	90	0	58	34	15	10	39	1.82
540232--540262	12	2.6	12	89	0	53	6	16	12	64	1.47
542909--542950	11	3.9	11	78	6	50	21	14	4	59	1.53
546000--546040	13	3.2	13	93	3	66	21	17	39	21	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
549422--549473	22	2.3	22	80	12	61	69	3	1	25	1.16
550478--550510	3	11.0	3	100	0	66	33	0	0	66	0.92
551905--551967	32	2.0	32	81	6	74	53	7	4	33	1.51
551602--552046	197	2.3	197	83	3	574	46	9	6	37	1.64
556521--556558	19	2.0	20	84	5	51	63	13	15	7	1.51
561041--561099	14	4.3	14	95	2	93	11	18	0	69	1.18
567383--567408	13	2.0	13	100	0	52	23	7	0	69	1.14
574371--574411	21	1.9	22	95	5	75	75	0	7	17	1.02
574366--574434	21	3.4	19	80	13	68	72	1	7	18	1.15
581040--581065	13	2.0	13	100	0	52	84	0	7	7	0.77
581126--581176	23	2.2	24	92	3	86	74	0	5	19	1.02
581557--581631	36	2.1	36	100	0	150	26	18	21	33	1.96
595230--595379	77	1.9	79	82	8	191	42	8	5	44	1.56
606455--606528	24	3.1	24	65	16	64	24	8	16	51	1.71
606437--606581	48	3.0	48	86	5	213	24	9	18	47	1.78
606597--606705	53	2.1	53	85	3	148	25	15	19	39	1.91
607104--607179	29	2.6	29	91	0	125	34	10	17	38	1.84
613575--613720	47	3.1	46	89	4	211	24	9	17	47	1.77
613742--613851	53	2.1	53	87	3	159	30	17	17	35	1.93
614245--614320	29	2.6	29	85	0	98	36	9	17	36	1.81
617810--617838	12	2.5	12	94	5	51	82	10	6	0	0.83
626357--626991	81	8.0	81	84	5	828	37	12	20	30	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
627023--627145	49	2.5	49	78	6	113	37	16	24	21	1.93
631170--631211	19	2.2	19	87	8	59	30	16	28	23	1.96
631137--631291	75	2.1	75	80	2	168	32	17	21	28	1.96
632095--632249	68	2.3	68	87	4	215	32	13	20	32	1.92
632199--632742	81	6.7	81	87	3	736	37	11	24	27	1.89
632225--632742	244	2.1	243	88	1	779	36	11	24	27	1.90
638755--639413	103	6.4	103	78	8	511	35	12	13	38	1.82
638859--639614	207	3.6	206	82	6	563	34	11	13	39	1.81
639246--639703	211	2.2	210	91	2	744	35	10	12	42	1.76
639268--639622	106	3.4	104	77	5	417	34	10	13	41	1.78

Tables:   1   2   3   4   5   6   7