genome.fa.s7808.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007808.1 Hibiscus syriacus cultivar Beakdansim tig00110129_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1698870

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1608476--1608537	7	8.6	7	83	13	54	77	4	17	0	0.94
1608491--1608591	25	4.0	26	77	14	95	75	0	18	4	1.04
1608481--1608590	26	4.3	23	75	22	80	74	1	19	4	1.08
1608467--1608588	12	10.4	11	72	19	70	76	2	17	4	1.06
1608587--1608612	6	4.3	6	100	0	52	84	0	0	15	0.62
1608573--1608617	21	2.1	21	84	8	56	82	0	4	13	0.82
1612242--1612335	40	2.3	40	96	0	170	24	17	24	34	1.96
1612989--1613100	36	3.1	35	80	2	134	50	8	11	29	1.69
1613190--1613225	17	2.1	17	89	0	54	38	11	19	30	1.86
1613222--1613378	44	3.6	43	79	3	163	33	14	21	31	1.92
1613319--1613943	159	4.0	157	83	4	690	28	20	17	34	1.95
1619087--1619189	51	2.0	51	98	0	197	27	18	13	40	1.88
1625543--1625601	18	3.3	18	92	0	100	25	20	20	33	1.97
1627668--1627702	13	2.6	14	95	4	63	20	22	14	42	1.88
1627915--1627980	29	2.3	29	94	0	114	33	6	27	33	1.81
1631235--1631368	41	3.3	40	77	5	126	38	22	17	21	1.94
1631257--1631370	20	5.7	20	82	2	129	40	21	18	19	1.92
1631357--1631423	20	3.3	20	95	0	116	31	26	19	22	1.98
1631257--1631385	40	3.2	39	79	9	134	38	23	18	19	1.93
1634751--1634858	20	5.4	21	77	9	93	39	24	18	17	1.92
1634751--1634833	40	2.1	40	84	8	107	37	25	19	18	1.94
1634907--1634972	33	2.0	34	87	3	98	12	22	18	46	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1634941--1634991	19	2.7	19	84	0	57	13	21	17	47	1.82
1634897--1634997	53	1.9	54	91	4	170	13	20	16	48	1.81
1634902--1635017	52	2.2	53	87	3	162	14	21	18	45	1.85
1635127--1635163	14	2.6	14	86	0	56	48	21	0	29	1.50
1636542--1636644	21	4.9	21	73	2	82	21	19	35	23	1.96
1636542--1636653	42	2.7	42	78	2	109	23	17	35	23	1.95
1637132--1637180	20	2.5	20	100	0	98	38	26	20	14	1.91
1637203--1637358	34	4.4	34	70	13	136	17	19	19	42	1.89
1637225--1637282	20	2.9	20	94	0	98	22	18	20	37	1.94
1637187--1637358	53	3.2	53	68	16	147	18	19	19	42	1.89
1639242--1639291	20	2.5	20	83	0	64	38	28	16	18	1.91
1639671--1639717	22	2.1	22	84	7	60	25	17	34	23	1.96
1639921--1640087	20	8.3	20	85	1	226	22	19	17	39	1.92
1640084--1640129	21	2.2	21	92	0	74	39	17	26	17	1.91
1640105--1640192	40	2.2	40	80	10	99	29	18	27	25	1.98
1640681--1640742	27	2.3	27	88	2	90	46	11	1	40	1.49
1640681--1640830	29	5.7	26	76	15	98	50	14	1	34	1.51
1640754--1640836	29	2.9	29	89	3	125	53	19	1	26	1.53
1648678--1648751	23	3.3	23	82	1	87	32	20	20	27	1.97
1656950--1657039	3	30.0	3	100	0	180	33	0	0	66	0.92
1661797--1661833	9	3.9	10	82	13	51	24	0	8	67	1.17
1663065--1663092	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1666506--1666579	36	2.1	36	87	5	105	47	1	18	32	1.58
1666515--1666597	18	4.7	18	83	2	89	45	3	19	31	1.67
1666508--1666597	36	2.6	35	84	7	103	44	3	20	32	1.67
1667177--1667239	27	2.3	26	92	7	108	41	33	9	15	1.80
1667175--1667245	27	2.4	30	81	18	103	40	35	9	14	1.79
1667202--1667672	221	2.2	217	88	5	688	38	26	10	24	1.88
1667411--1667902	249	1.9	254	90	4	780	37	28	10	23	1.88
1667636--1667709	38	2.0	38	94	2	132	41	36	8	13	1.74
1668820--1669322	181	3.0	163	82	8	480	43	12	14	29	1.83
1668983--1669570	181	3.2	181	89	2	894	42	13	15	28	1.85
1676020--1676110	18	5.2	18	67	16	57	18	42	19	18	1.89
1676024--1676104	31	2.6	31	84	9	103	18	41	20	18	1.90
1676094--1676127	15	2.3	15	100	0	68	11	35	26	26	1.91
1676091--1676145	8	6.5	8	85	12	67	14	34	25	25	1.94
1682980--1683005	13	2.0	13	100	0	52	53	7	7	30	1.57
1683794--1683827	16	2.2	15	89	5	50	47	0	2	50	1.16
1684155--1684179	3	8.3	3	100	0	50	68	0	0	32	0.90
1687246--1687286	20	2.0	21	85	4	57	48	14	2	34	1.57
1688057--1688281	95	2.4	94	84	3	265	34	14	22	28	1.93
1688581--1688791	59	3.6	59	93	0	361	34	10	18	36	1.85
1689137--1689392	68	3.8	68	90	0	404	30	14	25	29	1.95
1689350--1689798	81	5.5	81	85	2	562	36	10	21	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1689370--1689822	243	1.9	243	85	3	626	37	10	21	30	1.88
1692816--1692853	16	2.4	16	100	0	76	47	0	18	34	1.49
1694050--1694213	59	2.8	59	89	2	253	32	9	21	35	1.86
1694426--1694456	14	2.2	14	94	0	53	54	0	16	29	1.42
1694565--1694905	68	5.0	68	90	0	522	31	14	24	29	1.95

Tables:   1   2   3   4   5   6   7

The End!