Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007822.1 Hibiscus syriacus cultivar Beakdansim tig00110159_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1828853

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  10  of  10  ( 1099 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1791068--1791722
335
2.0
333
91
0
1067
37
19
16
26
1.92
1792222--1792264
20
2.2
20
84
8
54
16
30
20
32
1.95
1793045--1793096
24
2.2
24
100
0
104
15
19
25
40
1.90
1800250--1800316
20
3.3
20
89
0
98
32
23
25
17
1.97
1800336--1800392
22
2.8
19
78
17
69
21
21
33
24
1.97
1800472--1800532
31
2.0
31
93
3
106
44
18
6
31
1.75
1803664--1803728
20
3.2
20
88
0
94
32
21
27
18
1.97
1803664--1803736
20
3.7
20
88
0
92
32
23
26
17
1.97
1803755--1803815
20
3.0
19
77
15
68
24
21
31
22
1.98
1803755--1803834
20
3.8
21
78
15
67
22
18
33
25
1.97
1803913--1803973
31
2.0
31
96
3
115
42
18
6
32
1.76
1804534--1804566
16
2.0
17
94
5
59
42
21
0
36
1.53
1809033--1809086
13
3.9
14
76
13
58
61
11
1
25
1.40
1809560--1809621
21
3.0
21
83
4
81
20
22
32
24
1.98
1809595--1809634
21
1.9
21
84
0
53
22
20
32
25
1.98
1811217--1811261
24
1.9
23
82
13
56
66
6
0
26
1.16
1811402--1811451
26
1.9
26
91
0
82
64
2
0
34
1.05
1820227--1820276
2
25.0
2
100
0
100
50
0
0
50
1.00
1826113--1826171
22
2.7
23
81
5
68
66
0
1
32
1.02

Tables:   1   2   3   4   5   6   7   8   9   10

The End!