genome.fa.s7822.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007822.1 Hibiscus syriacus cultivar Beakdansim tig00110159_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1828853

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  2  of  10  ( 1099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
273011--273066	16	3.5	16	100	0	112	19	25	32	23	1.98
274666--274911	42	5.8	42	79	3	242	32	18	21	27	1.97
277998--278351	41	8.6	41	80	5	313	38	18	16	26	1.91
277998--278351	83	4.3	82	78	6	306	38	18	16	26	1.91
277998--278307	163	1.9	165	86	4	448	39	18	15	26	1.91
279133--279256	31	3.9	32	78	9	139	34	20	17	27	1.95
279962--279995	2	17.0	2	100	0	68	50	0	0	50	1.00
283529--283608	24	3.3	24	94	0	142	26	16	18	38	1.92
285203--285262	23	2.6	23	94	0	102	41	35	0	23	1.55
285387--285446	19	3.9	14	76	21	50	28	8	63	0	1.23
285390--285440	19	2.7	19	96	0	93	27	9	62	0	1.26
285563--285640	31	2.5	31	93	0	138	33	15	21	29	1.94
285703--285803	49	2.1	49	100	0	202	31	15	12	39	1.86
292696--292766	37	1.9	37	82	2	90	33	15	8	42	1.77
292576--293162	194	3.0	197	89	5	857	33	17	12	36	1.87
292846--293199	36	9.6	36	68	13	139	32	18	11	37	1.86
292864--293190	37	8.8	36	70	13	157	32	19	10	37	1.86
293322--293417	36	2.6	36	83	1	111	25	21	12	40	1.88
293258--293604	109	3.3	101	81	7	324	26	20	13	38	1.90
293424--293765	36	9.3	36	83	6	407	26	23	12	38	1.90
293351--293471	64	1.9	64	81	6	147	27	20	14	38	1.91
293499--293650	21	7.9	21	71	18	125	27	22	11	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
293426--293765	187	1.8	187	89	0	536	26	23	12	37	1.90
293462--293750	151	1.9	151	88	1	436	27	23	11	38	1.89
293705--293780	15	4.7	15	73	17	62	22	28	14	34	1.93
293704--293816	51	2.2	51	88	0	172	24	26	13	35	1.92
293755--293841	36	2.4	36	88	9	133	26	24	13	35	1.93
293481--293907	87	4.8	87	75	10	419	27	23	12	37	1.91
293827--293867	15	2.7	15	80	0	55	21	26	19	31	1.97
293849--293994	39	3.8	39	83	6	165	30	17	15	36	1.91
293996--294187	52	3.7	52	83	3	235	30	10	18	39	1.85
293996--294244	52	4.6	52	78	10	234	30	10	18	39	1.85
293997--294244	105	2.3	109	80	8	276	30	10	18	39	1.86
294288--294378	42	2.2	41	80	7	105	25	18	19	36	1.95
294533--294608	22	3.5	22	77	13	95	23	17	25	34	1.96
294514--294662	42	3.6	42	80	6	160	26	18	23	31	1.98
295610--295643	15	2.4	14	90	5	50	82	0	11	5	0.83
298198--298282	17	5.2	17	75	11	88	43	1	0	55	1.07
298210--298279	14	4.6	14	68	16	50	44	1	0	54	1.09
311329--311385	3	19.3	3	96	3	107	33	0	0	66	0.92
317175--317215	20	2.0	20	95	0	73	26	17	36	19	1.94
317246--317309	28	2.3	28	94	0	110	25	25	29	20	1.99
320346--320372	2	13.5	2	100	0	54	48	0	0	51	1.00
320962--321021	2	30.0	2	83	6	77	48	1	3	46	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
321083--321126	7	6.3	7	78	0	52	50	36	0	13	1.42
321086--321126	21	2.0	21	95	0	73	46	39	0	14	1.45
321464--321539	20	3.8	20	80	7	82	50	5	6	38	1.51
321497--321558	28	2.3	27	81	13	76	54	6	3	35	1.42
321556--321612	21	2.7	21	77	0	69	45	29	3	21	1.68
321776--321825	23	2.1	24	92	3	84	48	2	0	50	1.12
322085--322161	16	4.8	16	93	0	118	41	10	27	20	1.85
323086--323115	3	10.0	3	92	0	51	33	3	0	63	1.11
324487--324682	30	6.6	29	77	10	148	17	12	10	59	1.61
324487--324698	89	2.4	88	82	8	234	17	12	9	60	1.58
325504--325559	29	1.9	29	82	7	69	44	17	1	35	1.60
326303--326334	16	2.0	16	100	0	64	37	25	18	18	1.94
329022--329064	2	22.0	2	95	4	79	48	0	0	51	1.00
330465--330570	36	2.9	37	83	6	119	33	16	14	34	1.89
330465--330570	37	2.9	36	83	4	115	33	16	14	34	1.89
330771--330878	38	2.9	38	90	2	157	41	14	12	31	1.83
330845--331010	65	2.6	64	83	7	203	34	13	12	39	1.82
330885--331024	64	2.1	64	82	8	158	32	15	12	40	1.84
330910--331044	64	2.1	63	78	9	139	33	16	11	38	1.85
330885--331046	65	2.5	64	78	8	148	32	16	11	38	1.85
331235--331316	28	2.8	28	83	12	112	25	13	13	47	1.79
331235--331331	28	3.4	27	82	15	106	25	15	13	45	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
331482--331620	40	3.4	40	76	14	149	25	35	16	22	1.95
331514--331644	43	3.1	43	74	14	137	29	35	16	19	1.93
331476--331655	83	2.2	83	84	2	245	25	35	16	22	1.95
331971--332008	14	2.8	14	88	4	51	31	0	0	68	0.90
333397--333501	29	3.6	30	82	6	108	20	16	6	57	1.61
334431--334478	23	2.1	22	85	14	62	50	10	2	37	1.49
336030--336093	31	2.1	31	96	0	119	35	28	18	17	1.93
339170--339223	23	2.4	22	79	11	65	27	3	3	64	1.27
339982--340044	26	2.4	26	97	0	117	49	9	3	38	1.51
342213--342300	35	2.4	37	84	3	117	47	4	4	43	1.44
342213--342392	38	4.9	36	77	7	134	45	6	5	42	1.53
342338--342363	13	2.0	13	100	0	52	46	7	7	38	1.61
342246--342384	75	1.9	74	85	8	192	47	7	5	40	1.53
343028--343734	84	8.6	82	77	6	712	23	19	26	30	1.98
343018--343734	164	4.3	162	78	6	724	23	19	26	30	1.98
343028--343741	248	2.9	248	96	0	1295	23	19	26	30	1.98
350191--350230	19	2.2	18	90	4	62	82	5	0	12	0.82
350315--350491	31	5.2	32	76	11	117	43	6	6	42	1.57
350245--350571	35	9.3	35	71	14	160	44	7	5	43	1.54
350517--350542	13	2.0	13	100	0	52	46	7	7	38	1.61
350425--350563	75	1.9	74	85	8	192	47	7	5	40	1.53
351003--351032	14	2.2	14	94	5	53	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
351311--351350	21	1.9	21	89	0	62	47	22	5	25	1.71
355540--355584	19	2.4	19	88	0	72	17	31	24	26	1.97
362912--363096	31	6.0	31	94	1	309	18	18	22	40	1.92
374670--374752	3	28.7	3	78	11	93	62	1	1	34	1.11
374686--374764	37	2.0	40	85	7	110	68	1	0	30	0.98
374689--374761	33	2.2	34	90	4	114	67	1	0	31	1.00
375968--376001	16	2.2	15	89	5	50	38	26	5	29	1.80
376291--376315	13	1.9	13	100	0	50	52	8	0	40	1.31
376521--376601	24	3.5	24	90	6	125	25	22	18	33	1.97
376589--376725	64	2.2	62	79	12	145	25	23	18	32	1.97
378808--378879	30	2.4	30	88	0	108	30	25	19	25	1.98
378866--378990	31	4.0	31	79	9	137	31	20	18	30	1.96
383400--383471	30	2.4	30	92	0	117	30	25	20	23	1.99
383458--383645	31	6.0	31	77	11	186	30	19	18	31	1.96
383483--383648	63	2.7	63	98	0	316	30	18	17	33	1.94
390372--390404	17	1.9	17	88	11	50	51	0	6	42	1.26
392861--392902	19	2.3	18	84	11	59	33	4	2	59	1.31
394096--394396	55	5.5	55	82	4	293	31	19	24	24	1.98
394159--394252	27	3.4	27	68	13	84	30	22	25	21	1.98
394236--394308	26	2.7	26	74	18	69	41	20	20	17	1.91
399857--399915	16	3.9	15	71	10	57	37	1	5	55	1.32
404205--404240	16	2.3	16	90	4	56	69	0	16	13	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
412809--412948	72	2.0	69	90	4	217	22	17	22	37	1.94
420073--420917	55	15.5	55	89	3	1273	28	28	13	28	1.95
420035--420917	108	8.1	110	89	3	1247	28	29	13	28	1.94
420073--420917	163	5.2	162	91	2	1277	28	28	13	28	1.95
423954--423998	5	8.2	5	83	16	54	2	22	0	75	0.91
423954--423998	11	4.1	11	83	8	56	2	22	0	75	0.91
423954--423998	17	2.7	16	86	10	63	2	22	0	75	0.91
423954--423998	22	2.0	22	87	8	65	2	22	0	75	0.91
424226--424284	2	29.5	2	100	0	118	50	0	0	49	1.00
426621--426759	21	6.6	21	86	3	183	16	20	20	42	1.89

Tables:   1   2   3   4   5   6   7   8   9   10