genome.fa.s7822.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007822.1 Hibiscus syriacus cultivar Beakdansim tig00110159_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1828853

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  5  of  10  ( 1099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
844280--844578	99	3.0	97	90	4	438	44	10	0	44	1.38
844280--844578	49	6.1	49	91	3	449	44	10	0	44	1.38
844462--844538	22	3.3	22	65	28	59	45	10	0	44	1.38
844280--844578	148	2.0	148	88	3	451	44	10	0	44	1.38
844533--844565	13	2.4	14	90	5	50	39	15	0	45	1.46
847505--847565	26	2.4	24	76	15	59	42	1	6	49	1.38
847926--847953	14	2.0	14	100	0	56	71	14	7	7	1.29
848271--848375	42	2.4	45	75	15	114	49	8	0	41	1.33
848335--848397	28	2.2	30	94	5	112	57	12	0	30	1.36
848339--848404	28	2.4	28	87	10	107	56	12	0	31	1.36
848374--848422	21	2.3	21	85	3	71	53	16	0	30	1.43
848570--848628	24	2.5	24	88	0	91	11	25	16	45	1.82
849115--849242	29	4.4	29	92	2	204	21	23	35	18	1.95
850776--850806	11	2.8	11	100	0	62	35	0	0	64	0.94
851369--851413	20	2.2	20	92	0	72	48	11	6	33	1.65
870635--870667	3	11.0	3	93	0	57	36	0	0	63	0.95
872797--872865	30	2.3	29	75	9	68	27	5	1	65	1.24
876135--876166	15	2.1	15	94	0	55	25	18	9	46	1.79
883503--883566	11	5.5	11	78	14	56	82	0	17	0	0.66
883514--883560	15	3.2	14	79	8	58	85	0	14	0	0.61
883491--883566	25	3.0	26	90	9	122	81	0	18	0	0.69
883491--883565	16	4.4	16	73	17	71	81	0	18	0	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
883891--883936	19	2.6	18	83	12	60	34	8	6	50	1.59
884921--885724	83	9.7	83	95	0	1419	27	12	22	38	1.90
886691--887652	113	8.7	112	88	4	1256	37	14	18	30	1.90
886928--886972	24	1.9	23	82	13	56	51	6	24	17	1.70
887154--887198	24	1.9	23	82	13	56	51	6	24	17	1.70
886684--887652	339	2.9	337	89	3	1419	37	14	18	30	1.90
887477--887528	17	3.1	17	68	15	54	46	9	23	21	1.80
895646--895707	21	2.9	22	80	4	72	43	1	3	51	1.27
896843--896895	24	2.2	24	80	6	63	39	3	3	52	1.37
900803--900842	22	1.9	22	90	10	66	65	7	0	27	1.20
902856--902900	16	2.8	17	74	19	51	68	0	24	6	1.13
904873--904912	20	2.0	20	100	0	80	40	15	10	35	1.80
905406--905544	44	3.1	44	91	3	208	28	23	9	38	1.86
910202--910241	21	1.9	22	90	10	66	12	10	40	37	1.77
910377--910467	20	4.8	20	85	10	127	25	18	31	24	1.97
910376--910448	36	2.0	36	94	0	128	26	17	31	24	1.97
910690--910746	18	2.9	19	78	12	62	45	12	12	29	1.78
912147--912217	33	2.2	33	84	5	90	25	26	15	32	1.95
912624--912678	20	2.8	20	88	0	74	21	18	32	27	1.96
917214--917281	23	3.0	23	97	0	127	26	26	22	25	2.00
917463--917504	21	2.0	21	85	4	57	59	11	2	26	1.45
921852--921888	10	3.5	11	85	14	51	48	0	2	48	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
921879--921931	21	2.6	21	88	8	74	41	1	11	45	1.51
921923--921968	2	24.0	2	83	16	62	47	0	2	50	1.13
926096--926154	20	2.7	23	82	10	79	22	22	33	22	1.97
934879--934969	20	4.6	20	82	4	85	15	17	21	45	1.86
936858--936961	20	5.5	20	75	15	96	41	21	17	20	1.90
936861--936972	54	2.1	54	86	3	154	41	20	18	18	1.90
937008--937074	20	3.3	20	87	0	89	22	17	20	38	1.93
936989--937144	34	4.4	34	72	10	143	16	19	20	42	1.89
937625--937729	21	5.0	21	74	3	95	20	37	19	22	1.95
937622--937732	42	2.6	42	78	5	118	20	37	18	22	1.94
939087--939122	14	2.6	14	90	0	54	30	0	22	47	1.52
939249--939344	33	2.9	34	88	3	149	13	23	19	42	1.87
939316--939422	20	5.7	20	73	18	113	16	21	25	36	1.94
939316--939399	39	2.1	40	86	6	118	16	21	25	36	1.94
942751--942816	20	3.3	20	95	0	105	22	18	21	37	1.94
942813--942858	21	2.2	21	88	0	65	36	17	28	17	1.92
942940--943116	85	2.1	85	100	0	354	30	11	19	38	1.86
948413--948468	30	1.9	29	82	7	69	42	14	12	30	1.82
950014--950070	23	2.7	21	72	8	53	56	14	8	21	1.65
951129--951165	16	2.3	16	90	9	58	35	0	8	56	1.29
951907--951939	6	5.7	6	92	7	59	51	18	30	0	1.46
951906--951939	11	3.0	11	95	4	59	52	17	29	0	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
964051--964088	14	2.6	14	87	4	58	23	0	44	31	1.54
966912--967093	43	4.2	43	77	1	150	24	18	23	34	1.96
967561--967633	21	3.5	21	86	0	83	0	35	20	43	1.52
967576--967644	21	3.3	21	83	0	84	0	37	17	44	1.49
970728--970832	43	2.5	40	78	15	115	30	19	18	32	1.95
971417--971516	54	1.9	51	84	10	130	50	14	5	31	1.64
972551--972657	42	2.5	42	86	5	128	25	16	20	37	1.93
972576--972689	42	2.7	42	75	5	122	27	21	17	34	1.95
976227--976273	24	2.0	24	91	0	76	46	6	17	29	1.72
976819--976894	37	2.1	37	94	0	134	44	25	6	23	1.77
981084--981129	23	2.0	23	100	0	92	17	21	34	26	1.95
985956--985984	15	1.9	15	100	0	58	65	0	0	34	0.93
986917--987269	175	2.0	175	99	0	697	32	21	15	30	1.94
997516--997556	13	3.3	13	83	13	59	19	43	21	14	1.87
1000870--1000915	18	2.7	17	83	6	58	36	4	28	30	1.76
1001530--1001602	33	2.2	33	92	2	121	38	36	12	12	1.81
1001761--1001846	38	2.3	37	91	4	136	38	39	11	10	1.76
1001466--1002071	252	2.4	252	87	7	863	35	28	11	23	1.90
1001866--1002249	195	2.0	193	93	3	666	36	26	12	25	1.91
1001869--1002299	195	2.2	193	88	4	586	35	28	11	24	1.90
1003128--1003220	42	2.2	42	94	0	159	24	34	11	29	1.91
1009337--1009414	30	2.8	27	76	14	77	38	2	0	58	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1009372--1009461	16	5.3	16	68	21	58	40	1	0	58	1.05
1009365--1009464	48	2.1	47	81	10	114	39	1	0	60	1.04
1009379--1009470	13	7.5	13	73	13	61	39	1	0	59	1.04
1010117--1010156	17	2.4	17	86	0	53	52	5	0	42	1.23
1010733--1010776	23	2.0	22	86	8	63	36	6	0	56	1.26
1012788--1012821	14	2.3	15	90	5	52	61	0	2	35	1.11
1014253--1014414	56	2.9	55	88	3	254	35	12	17	33	1.88
1014253--1014428	55	3.2	55	87	1	271	35	12	17	34	1.88
1014776--1014865	45	2.0	46	86	6	130	42	7	24	25	1.81
1014777--1014874	46	2.2	45	83	5	117	43	8	23	24	1.80
1018802--1018846	23	2.0	23	86	0	63	31	22	24	22	1.99
1021333--1021375	12	3.8	12	75	12	54	37	18	23	20	1.94
1024559--1024612	22	2.5	22	84	0	63	40	12	24	22	1.89
1024574--1024622	22	2.3	22	82	3	55	42	18	18	20	1.89
1025236--1025350	61	1.9	61	89	3	178	30	27	18	23	1.97
1033811--1033866	20	2.8	20	88	0	76	39	12	16	32	1.85
1034414--1034483	23	3.0	23	80	0	68	34	20	18	27	1.96
1037725--1037769	20	2.3	20	84	3	56	35	17	20	26	1.95
1037917--1038003	36	2.4	36	92	0	138	47	21	21	9	1.79
1038167--1038395	55	4.2	55	86	3	293	34	11	16	36	1.85
1038167--1038395	109	2.1	110	83	4	293	34	11	16	36	1.85
1038721--1038832	46	2.5	46	85	7	140	39	11	22	26	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1040288--1040330	22	2.0	21	86	4	59	55	0	2	41	1.12
1041895--1041943	23	2.2	22	85	10	64	36	0	0	63	0.95
1042347--1042423	37	2.1	37	92	0	127	29	20	22	27	1.98
1044492--1044521	13	2.4	13	94	5	53	0	36	0	63	0.95
1044518--1044603	24	3.7	22	77	18	86	5	16	0	77	0.95
1044515--1044577	30	2.1	29	85	8	83	4	15	0	79	0.90
1044520--1044600	26	3.3	27	78	14	86	6	17	0	76	0.98
1044518--1044606	36	2.6	33	78	16	99	5	15	0	78	0.93
1045460--1045587	50	2.6	50	79	2	141	14	33	28	22	1.94
1051247--1051468	111	2.0	111	94	1	392	44	10	8	36	1.70

Tables:   1   2   3   4   5   6   7   8   9   10