genome.fa.s7834.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007834.1 Hibiscus syriacus cultivar Beakdansim tig00110183_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  925658

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
253314--253345	6	5.5	6	96	3	57	0	15	53	31	1.43
255136--255168	17	1.9	17	88	11	50	27	3	9	60	1.42
255996--256070	11	6.6	11	72	17	64	46	0	2	50	1.15
255998--256070	21	3.2	21	74	23	76	46	0	2	50	1.15
256003--256059	26	2.2	26	84	6	71	45	0	3	50	1.18
256594--256652	31	1.9	31	85	0	82	50	3	5	40	1.41
256622--256685	27	2.4	27	86	5	85	51	1	4	42	1.32
256643--256705	27	2.6	25	85	12	78	53	0	3	42	1.16
256646--256710	25	2.6	25	75	18	71	52	0	3	44	1.16
256643--256731	27	3.5	25	76	16	76	51	1	4	42	1.29
257212--257256	22	2.0	22	83	8	56	37	6	2	53	1.40
262687--262719	14	2.4	14	85	14	50	51	0	6	42	1.26
262690--262719	15	2.1	15	93	6	53	53	0	6	40	1.27
262920--262959	21	1.9	21	89	0	62	55	10	7	27	1.60
263473--263604	18	7.6	17	79	12	94	27	16	9	46	1.79
263466--263604	36	4.0	34	82	8	149	27	17	10	44	1.81
263466--263616	54	2.9	53	81	8	168	27	17	9	45	1.80
263466--263584	18	6.7	18	84	5	161	28	17	9	44	1.80
271064--271472	20	20.5	20	85	5	513	34	26	18	20	1.96
272146--272192	24	2.0	24	87	8	69	25	14	21	38	1.92
274692--275017	19	18.4	19	80	15	405	47	17	20	14	1.82
274692--275017	33	9.2	34	82	13	321	47	17	20	14	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
274720--275039	161	2.0	157	93	3	552	46	16	21	14	1.83
274720--275039	52	6.0	52	93	4	550	46	16	21	14	1.83
275046--275147	19	5.6	19	85	12	151	14	23	17	44	1.86
275254--275290	14	2.6	14	91	0	65	45	21	0	32	1.52
275271--275341	37	1.9	37	97	0	133	52	16	1	29	1.53
275271--275350	37	2.2	37	90	0	124	53	17	1	27	1.51
277216--277272	14	3.7	14	77	20	60	45	22	21	10	1.82
277197--277289	33	2.8	33	95	0	168	47	21	20	10	1.80
277160--277294	19	7.6	19	76	16	128	45	23	19	11	1.82
277290--277418	19	7.3	19	75	17	125	8	17	28	45	1.77
277290--277381	33	2.8	33	93	3	150	7	18	28	45	1.76
277462--277841	93	4.1	93	99	0	753	46	18	12	22	1.83
277462--277841	185	2.0	186	99	0	753	46	18	12	22	1.83
279547--279636	14	5.7	14	74	23	81	42	23	25	8	1.83
279539--279653	33	3.5	33	95	0	212	45	20	24	9	1.81
279546--279658	19	6.8	18	72	23	88	43	22	24	9	1.83
279670--279724	14	3.6	14	73	21	56	9	25	23	41	1.83
279654--279724	33	2.2	33	94	0	124	8	22	25	43	1.81
279665--279746	33	2.5	33	89	2	119	9	25	21	42	1.84
279677--279765	20	4.8	20	72	19	75	12	24	19	43	1.85
279845--279915	33	2.2	33	92	0	115	47	18	22	11	1.80
280096--280150	22	2.5	22	81	0	74	20	16	40	23	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
280296--280489	20	9.6	20	82	5	221	19	19	25	35	1.95
280296--280489	60	3.2	60	83	0	253	19	19	25	35	1.95
280482--280558	21	3.7	20	70	13	57	27	16	23	32	1.96
280544--280595	20	2.6	20	96	0	95	21	13	26	38	1.90
284737--284840	52	2.3	42	73	26	111	48	13	9	28	1.74
286850--286942	21	4.5	21	78	4	100	39	18	24	17	1.91
286850--286942	41	2.3	41	100	0	186	39	18	24	17	1.91
286869--287003	41	3.3	41	82	6	132	38	20	21	19	1.94
286931--287019	20	4.4	20	78	2	79	34	24	16	23	1.95
287213--287256	22	2.0	22	95	0	79	20	45	15	18	1.85
287520--287557	20	1.9	20	88	0	58	13	15	21	50	1.78
288876--288920	18	2.5	18	88	0	72	26	44	15	13	1.83
289402--289447	20	2.3	20	88	0	65	36	26	21	15	1.93
289457--289514	14	3.9	14	79	16	71	48	24	17	10	1.78
289441--289531	32	2.8	33	91	3	148	45	23	18	13	1.84
289582--289665	20	4.3	19	81	4	78	15	20	23	40	1.90
289592--289646	20	2.8	19	89	5	83	16	25	23	34	1.95
289879--291659	889	2.0	888	99	0	3528	27	20	23	28	1.99
292549--292616	19	3.8	19	85	14	101	47	17	22	13	1.82
292606--292692	19	4.8	19	76	13	103	16	20	18	44	1.86
292606--292721	52	2.2	52	87	3	162	15	21	20	42	1.89
292689--292725	19	1.9	19	94	0	65	13	27	24	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
293673--293726	24	2.2	24	86	0	72	24	14	20	40	1.90
296208--296330	33	3.7	33	86	4	185	43	19	21	14	1.87
296208--296337	66	2.0	66	95	0	233	43	19	21	16	1.88
296339--296459	19	6.8	19	69	21	91	14	20	19	46	1.84
296330--296459	53	2.5	53	94	0	224	15	20	19	45	1.85
296566--296602	14	2.6	14	91	0	65	45	24	0	29	1.53
297957--298023	21	3.2	21	68	4	55	19	20	35	23	1.95
297957--298079	42	2.9	41	80	7	113	22	17	36	22	1.95
300062--300246	19	10.1	19	74	16	149	44	21	21	12	1.84
300087--300185	33	3.0	33	90	1	144	40	25	22	12	1.88
300157--300241	39	2.2	38	89	6	127	49	22	17	10	1.77
300242--300289	20	2.5	19	77	12	53	10	16	27	45	1.80
300808--300900	20	4.6	20	76	5	71	25	16	23	34	1.95
300890--300982	20	4.5	21	78	4	100	17	24	18	39	1.91
300824--300963	41	3.4	42	82	3	144	21	20	20	38	1.94
300890--300982	41	2.3	41	100	0	186	17	24	18	39	1.91
301798--302062	131	2.0	132	97	0	505	50	10	3	35	1.54
304851--304881	12	2.5	13	89	10	55	48	0	0	51	1.00
304876--304940	17	3.6	17	80	10	76	26	1	0	72	0.94
304888--304945	28	2.0	31	83	10	77	24	1	0	74	0.92
313486--313524	2	19.5	2	100	0	78	51	0	0	48	1.00
318370--318404	2	17.5	2	100	0	70	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
320131--320246	44	2.6	44	73	0	115	19	18	23	38	1.93
320285--320580	45	6.6	45	79	5	269	20	19	24	35	1.96
320296--320580	135	2.1	134	82	4	351	20	18	24	35	1.95
325574--325652	25	3.1	25	75	12	63	62	1	3	32	1.21
325556--325690	21	6.4	21	67	18	68	63	0	4	31	1.19
325915--325939	2	12.5	2	100	0	50	52	0	0	48	1.00
326395--326487	37	2.5	37	85	0	114	30	12	13	43	1.82
340141--340184	3	14.7	3	100	0	88	68	0	31	0	0.90
344095--344187	21	4.5	21	78	4	100	39	18	24	17	1.91
344095--344187	41	2.3	41	100	0	186	39	18	24	17	1.91
344114--344248	41	3.3	41	82	6	132	38	20	21	19	1.94
344176--344270	20	4.7	20	80	2	91	34	24	17	23	1.96
344455--344498	22	2.0	22	90	0	70	20	43	15	20	1.88
344775--344817	20	2.2	20	95	0	77	9	18	18	53	1.70
346133--346177	18	2.5	18	81	0	63	26	44	13	15	1.83
346658--346724	20	3.4	20	81	2	73	38	23	22	14	1.92
346713--346770	14	3.9	14	79	16	71	48	24	17	10	1.78
346697--346787	32	2.8	33	94	3	166	47	21	18	12	1.81
346847--346901	20	2.8	19	89	5	83	16	25	23	34	1.95
349457--349510	24	2.2	24	86	0	72	24	14	20	40	1.90
349685--349709	12	2.1	12	100	0	50	72	0	28	0	0.86
351983--352109	33	3.8	33	83	4	175	44	18	21	15	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
351984--352116	66	2.0	66	92	0	221	42	18	21	17	1.89
352109--352151	20	2.2	20	87	4	61	16	18	23	41	1.89
352287--352323	14	2.6	14	91	0	65	45	24	0	29	1.53
353764--354043	137	2.0	139	97	2	537	22	24	27	24	2.00
355916--356010	32	2.9	33	85	4	129	38	27	21	12	1.89
355982--356033	20	2.7	19	88	5	77	46	23	19	11	1.82
356029--356073	19	2.4	19	88	0	72	6	15	24	53	1.66
356624--356737	20	5.7	20	81	6	122	25	18	24	31	1.97
356624--356739	61	1.9	61	87	0	169	25	18	24	32	1.97
356726--356795	20	3.5	20	78	3	79	18	22	17	41	1.90

Tables:   1   2   3   4   5