genome.fa.s7834.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007834.1 Hibiscus syriacus cultivar Beakdansim tig00110183_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  925658

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
807764--807822	29	2.0	29	100	0	118	23	13	13	49	1.78
812445--812503	29	2.0	29	100	0	118	23	13	13	49	1.78
815297--815349	25	2.1	26	82	10	65	41	11	3	43	1.58
816257--816388	48	2.7	47	78	2	147	31	27	18	22	1.98
816461--816517	25	2.3	25	96	0	105	35	17	12	35	1.87
819057--819148	24	3.6	23	69	24	58	47	2	1	48	1.20
819585--819735	64	2.4	64	80	2	169	43	20	10	25	1.84
819631--819765	32	4.2	32	74	2	112	42	18	13	25	1.86
822541--822571	12	2.6	12	100	0	62	25	41	0	32	1.56
822904--822983	29	2.7	31	72	14	80	33	17	8	40	1.81
824434--824472	18	2.2	18	95	0	69	53	5	15	25	1.62
824585--824625	21	2.0	21	85	0	55	56	2	7	34	1.40
825347--825421	30	2.5	30	84	2	87	25	24	18	32	1.97
826381--826439	27	2.1	28	87	3	84	40	22	13	23	1.89
829591--830134	270	2.0	270	94	0	964	40	11	19	27	1.87
831918--831959	21	2.0	21	100	0	84	38	33	4	23	1.76
832527--832603	36	2.2	35	90	2	118	25	2	18	53	1.57
832511--832604	36	2.7	35	82	10	115	29	2	20	47	1.61
834961--835151	53	3.6	53	99	0	375	21	25	18	34	1.96
835600--835636	12	3.2	12	82	17	51	18	5	8	67	1.36
835941--836003	16	3.8	16	73	12	56	41	11	7	39	1.70
837098--837260	60	2.7	59	75	8	150	33	19	5	41	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
837411--837573	60	2.8	60	79	3	170	38	6	22	32	1.80
840967--841025	20	3.0	20	97	2	111	35	49	5	10	1.59
845853--845930	29	2.7	30	77	18	85	42	8	14	34	1.77
846130--846165	14	2.6	14	100	0	72	44	5	22	27	1.75
847971--848053	23	3.6	23	76	18	91	16	27	27	27	1.97
848539--848585	6	7.8	6	100	0	94	48	0	17	34	1.47
848649--848693	21	2.1	22	87	4	65	20	26	28	24	1.99
849290--849360	31	2.3	31	92	0	115	35	12	26	25	1.92
850363--850500	45	3.1	45	89	4	219	43	5	21	30	1.74
851401--851452	24	2.3	21	87	9	68	67	19	1	11	1.31
852712--852799	2	44.5	2	88	2	133	50	2	1	46	1.21
853686--853722	2	18.5	2	100	0	74	51	0	0	48	1.00
857213--857290	4	19.5	4	80	15	56	69	0	3	26	1.06
857214--857292	21	3.8	19	75	15	68	68	0	3	27	1.07
857215--857305	9	10.3	9	78	15	68	65	0	3	30	1.08
857334--857376	18	2.3	18	96	4	77	51	4	4	39	1.44
857421--857474	16	3.6	16	71	19	53	37	16	7	38	1.77
857435--857486	12	4.0	12	72	18	50	38	13	7	40	1.73
857421--857487	28	2.4	28	89	0	107	37	16	7	38	1.77
862174--862226	18	2.9	18	91	0	88	18	20	32	28	1.97
862310--862709	212	1.9	213	97	0	757	31	13	15	39	1.86
868249--868301	18	2.9	18	83	5	63	20	18	30	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
870146--870206	21	2.7	23	82	15	81	32	29	0	37	1.58
871510--871591	23	3.8	21	76	10	67	19	23	32	24	1.97
871510--871593	20	3.9	21	80	11	73	19	23	32	25	1.97
872732--872793	20	3.0	20	78	2	70	17	25	32	24	1.97
873934--874014	20	3.8	21	81	12	85	19	24	32	23	1.98
873934--873994	23	2.8	20	87	9	77	21	24	32	21	1.98
889472--889517	23	2.0	23	87	4	67	15	17	19	47	1.82
890035--890080	8	6.1	7	85	7	56	54	4	4	36	1.40
890037--890080	23	1.9	23	90	9	72	52	4	4	38	1.42
890085--890132	11	3.9	11	76	23	51	37	14	8	39	1.76
890096--890148	16	3.6	16	76	23	71	37	13	7	41	1.72
890082--890201	27	4.4	27	78	11	138	37	13	7	41	1.72
890096--890155	16	4.0	16	71	22	58	38	13	6	41	1.70
890165--890278	12	8.8	12	71	19	68	37	11	7	42	1.70
890082--890220	27	5.1	27	79	6	120	38	12	6	42	1.69
890135--890320	65	2.9	65	91	2	304	38	12	6	41	1.69
890240--890285	16	3.1	16	76	23	64	39	15	6	39	1.73
890226--890285	28	2.1	28	96	0	111	38	13	8	40	1.75
890258--890403	35	4.3	35	79	13	171	41	12	5	41	1.66
890165--890313	12	11.8	12	66	20	54	37	12	7	42	1.71
890329--890377	12	3.8	12	75	19	53	40	10	6	42	1.63
890193--890389	98	2.0	99	89	2	306	40	12	5	42	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
890329--890383	28	2.0	28	92	0	92	40	10	5	43	1.63
893576--893608	2	17.0	2	93	6	59	51	0	0	48	1.00
895315--895352	20	1.9	20	84	10	51	42	15	0	42	1.47
895560--895652	32	2.9	32	76	12	102	31	19	17	32	1.95
898704--898735	13	2.3	15	89	10	50	56	12	0	31	1.37
898860--898897	20	1.9	20	84	10	51	42	15	0	42	1.47
899106--899196	31	2.9	31	78	3	101	31	16	17	34	1.92
899104--899197	32	3.0	32	79	1	109	32	15	17	34	1.91
903010--903047	20	1.9	20	84	10	51	42	15	0	42	1.47
905585--905626	22	1.9	22	85	9	59	9	11	35	42	1.74
909202--909275	3	25.0	3	94	5	125	31	0	0	68	0.89
911259--911591	131	2.5	130	91	1	515	31	12	17	37	1.88
914340--914408	27	2.6	27	85	0	93	36	20	17	26	1.94
914524--914576	17	3.2	17	81	2	63	45	9	3	41	1.54
921637--921696	29	2.1	29	93	0	102	35	21	16	26	1.95
923979--924030	27	2.0	26	81	11	61	46	19	15	19	1.85

Tables:   1   2   3   4   5

The End!