genome.fa.s7834.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007834.1 Hibiscus syriacus cultivar Beakdansim tig00110183_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  925658

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
528759--529092	165	2.0	167	98	1	654	32	14	20	32	1.93
532890--532941	23	2.3	23	86	6	79	15	23	26	34	1.94
536419--536557	58	2.4	58	84	7	167	43	5	20	29	1.75
537982--538036	28	2.0	28	85	7	76	27	1	29	41	1.66
537994--538122	63	2.0	65	89	3	199	28	1	25	44	1.63
538127--538227	7	14.3	7	69	23	52	28	2	21	46	1.66
538137--538184	21	2.3	21	85	0	60	31	4	22	41	1.73
538161--538212	14	3.6	14	84	5	68	30	3	19	46	1.68
538153--538227	29	2.6	28	80	14	89	28	2	21	48	1.64
538458--538781	80	4.1	78	77	7	274	31	16	18	33	1.93
538557--538670	40	2.8	41	67	12	99	35	15	16	32	1.91
538456--538830	80	4.6	80	77	5	213	32	16	17	33	1.93
538456--538830	161	2.3	163	77	4	375	32	16	17	33	1.93
538456--538830	82	4.6	79	76	5	200	32	16	17	33	1.93
544326--544432	43	2.5	42	80	3	124	30	10	18	40	1.84
544445--544886	221	2.0	219	98	1	850	26	34	12	26	1.92
545955--546047	48	1.9	48	97	0	177	52	10	7	29	1.63
552194--552338	29	5.0	29	95	0	236	47	19	3	29	1.66
552159--552408	87	2.9	87	78	4	261	48	17	4	29	1.68
552322--552458	58	2.4	58	93	1	231	47	13	6	32	1.69
553543--553587	17	2.6	17	96	0	81	15	24	42	17	1.88
553533--553561	13	2.3	13	94	5	51	17	24	41	17	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
557383--557441	21	2.8	21	89	5	84	20	5	23	50	1.67
558481--558529	24	2.0	24	96	0	89	44	12	22	20	1.84
559974--560049	40	1.9	40	88	0	116	21	10	18	50	1.76
562086--562156	31	2.3	31	82	4	90	39	21	14	25	1.90
567428--567497	31	2.3	31	82	5	88	40	22	11	25	1.88
567443--567510	31	2.2	31	86	5	93	42	20	13	23	1.87
571290--571316	13	2.1	13	100	0	54	37	14	25	22	1.93
573059--573130	31	2.3	30	88	2	90	13	36	9	40	1.78
578038--578105	27	2.6	27	86	6	86	35	19	11	33	1.88
596790--596828	15	2.6	15	95	0	69	28	23	12	35	1.91
600767--600819	27	1.9	28	85	11	74	24	15	16	43	1.87
606060--606117	29	2.0	29	86	6	82	17	15	34	32	1.91
606847--606874	2	14.0	2	100	0	56	50	0	0	50	1.00
609935--610223	55	5.3	55	87	2	377	30	23	16	29	1.96
610230--610381	51	3.0	51	99	0	295	26	29	14	29	1.95
611683--611785	9	11.7	9	71	18	67	7	18	0	72	1.13
611685--611729	16	2.8	16	87	12	74	8	13	0	77	0.98
611683--611792	18	6.2	17	76	19	84	7	19	0	72	1.13
621058--621163	47	2.2	49	86	5	153	43	17	11	27	1.83
633323--633363	21	2.0	21	90	0	64	7	17	4	70	1.28
637323--637364	20	2.1	20	86	0	57	28	28	21	21	1.99
641340--641438	33	3.0	32	85	5	135	29	21	16	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
641412--641764	78	4.5	78	80	1	431	21	21	17	39	1.92
643978--644034	20	2.8	20	91	0	87	36	12	17	33	1.87
664354--664399	20	2.3	19	85	14	58	50	8	15	26	1.73
665870--665938	35	2.0	35	97	0	129	28	20	24	26	1.99
666371--666550	89	2.0	91	94	4	321	25	15	13	46	1.81
668112--668171	17	3.5	17	73	13	68	46	5	11	36	1.62
668109--668178	35	2.0	35	100	0	140	42	8	11	37	1.72
674532--674609	37	2.1	37	97	0	147	33	17	16	32	1.93
675137--675330	96	2.0	97	97	1	372	43	15	21	19	1.87
677311--677336	5	5.2	5	100	0	52	0	19	57	23	1.40
686695--687460	381	2.0	379	96	2	1374	27	11	27	33	1.91
712982--713058	24	3.2	24	100	0	154	11	11	29	46	1.76
719586--719683	34	2.9	34	81	10	96	61	21	11	6	1.51
719604--719671	23	2.9	23	88	2	100	63	20	10	5	1.47
719604--719685	23	3.6	23	82	11	89	64	21	8	4	1.40
720995--721055	15	4.1	16	75	25	71	19	0	1	78	0.83
720996--721051	23	2.4	24	79	8	62	19	0	1	78	0.84
721147--721178	16	2.0	16	93	0	55	21	0	0	78	0.76
721184--721240	25	2.4	24	82	11	64	31	5	1	61	1.28
721512--721539	9	3.1	9	100	0	56	21	0	0	78	0.75
724376--724426	16	3.1	16	85	5	57	84	3	11	0	0.75
724382--724426	23	2.0	23	90	0	72	86	2	11	0	0.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
726108--726931	84	9.9	84	85	1	962	35	22	17	24	1.95
726108--726895	167	4.7	167	83	3	1008	35	22	17	23	1.95
728501--728555	3	19.7	3	78	10	55	23	0	1	74	0.91
728504--728549	14	3.7	12	81	18	58	23	0	2	73	0.94
728499--728551	14	3.9	14	71	28	51	22	0	1	75	0.90
728633--728670	12	3.0	13	82	17	53	21	0	0	78	0.74
728633--728670	19	2.0	19	90	10	60	21	0	0	78	0.74
728708--728806	38	2.6	38	75	13	96	28	6	1	64	1.23
729012--729058	6	7.5	6	77	17	51	12	0	4	82	0.80
729013--729163	13	11.2	13	68	14	65	14	7	3	74	1.16
729013--729063	26	2.0	26	88	7	77	11	1	5	80	0.97
729089--729155	26	2.5	27	81	13	86	17	7	2	71	1.22
729104--729185	26	3.3	25	77	17	75	20	8	2	68	1.28
732282--732385	37	2.8	37	83	0	127	41	13	13	31	1.83
733091--733126	18	1.9	19	88	5	56	30	5	0	63	1.17
733200--733240	15	2.6	16	81	14	50	14	7	0	78	0.96
737680--737748	17	4.1	17	77	15	72	78	8	13	0	0.97
737711--737762	26	1.9	28	84	7	72	76	11	9	1	1.09
739321--740376	106	10.0	106	88	2	1513	33	24	18	22	1.97
741075--741179	37	2.8	37	83	0	138	40	15	12	31	1.84
741939--741974	18	1.9	19	88	5	56	30	5	0	63	1.17
742044--742122	12	6.4	13	70	14	51	17	10	0	72	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
742747--742860	60	1.9	60	81	0	138	42	13	9	34	1.76
743054--743145	19	4.7	19	93	4	139	34	23	10	30	1.89
744082--744149	24	2.8	24	84	0	91	25	19	19	36	1.94
746163--746198	18	2.0	18	94	0	63	55	25	2	16	1.55
746444--746479	14	2.6	15	83	16	51	47	27	19	5	1.72
746467--746511	20	2.2	20	92	0	72	28	24	20	26	1.99
748737--748809	18	3.7	19	82	13	85	23	19	32	24	1.97
750944--751084	21	6.7	20	83	13	144	26	19	26	26	1.99
750944--751084	43	3.3	42	80	12	139	26	19	26	26	1.99
750962--751084	65	1.9	63	86	8	176	27	18	26	27	1.98
750962--751084	44	2.9	41	83	12	142	27	18	26	27	1.98
757006--757111	42	2.5	42	87	0	149	23	16	35	23	1.95
757006--757109	21	5.0	21	82	3	120	23	16	36	24	1.94
757253--757298	4	11.5	4	80	0	56	67	4	2	26	1.21
757410--757529	63	1.9	62	84	6	161	30	33	13	22	1.92
759230--759282	20	2.7	20	96	0	97	47	20	20	11	1.81
759662--759712	22	2.3	22	86	6	68	19	9	45	25	1.81
759807--759838	14	2.3	14	100	0	64	46	6	15	31	1.71
759894--759952	20	3.0	20	80	7	66	23	11	30	33	1.91
786910--786989	42	1.9	41	94	2	142	31	8	8	51	1.63
787431--787464	18	1.9	18	88	5	52	26	32	26	14	1.95
789213--789397	31	6.0	31	92	3	295	38	21	20	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
789213--789397	61	3.0	62	90	5	288	38	21	20	20	1.94
789214--789396	92	2.0	92	93	2	314	38	20	20	20	1.93
790348--790415	18	3.9	18	71	21	65	23	32	27	16	1.96
793365--793395	16	1.9	16	100	0	62	22	6	19	51	1.69
793578--793619	10	3.9	11	79	14	52	2	28	16	52	1.56
793787--793827	19	2.2	19	95	0	73	17	26	31	24	1.97
798157--798345	94	2.0	93	83	3	236	45	12	11	31	1.76
803934--803958	13	1.9	13	100	0	50	44	8	8	40	1.63
804209--804341	70	1.9	70	96	0	248	51	19	17	12	1.76
805546--805599	22	2.6	21	85	11	67	25	5	0	68	1.11

Tables:   1   2   3   4   5