genome.fa.s7834.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007834.1 Hibiscus syriacus cultivar Beakdansim tig00110183_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  925658

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
357325--357368	23	2.0	22	90	4	70	27	0	2	70	0.99
358644--358709	26	2.5	26	97	0	123	54	9	9	27	1.62
358644--358724	26	3.2	25	91	3	110	55	8	11	24	1.63
358926--358976	21	2.4	21	83	3	75	27	23	15	33	1.95
358986--359182	20	9.9	20	89	0	277	39	24	16	19	1.92
361918--362016	42	2.4	42	78	10	112	24	34	19	22	1.96
361918--362016	21	4.7	21	77	14	96	24	34	19	22	1.96
363238--363289	24	2.2	24	89	3	79	21	1	32	44	1.63
363407--363550	66	2.2	64	92	2	234	30	2	17	50	1.58
365183--365277	34	2.7	35	91	3	156	38	18	23	18	1.93
365247--365295	20	2.5	20	72	0	53	28	20	26	24	1.99
365337--365378	20	2.1	20	90	0	66	16	19	21	42	1.89
365660--365695	18	2.0	18	94	0	63	16	2	25	55	1.55
367932--367985	24	2.2	24	96	0	99	42	20	16	20	1.89
367932--367999	24	2.8	24	86	0	73	39	20	16	23	1.91
368939--369073	20	6.8	20	80	6	114	21	14	24	39	1.91
368945--369073	60	2.2	60	86	8	174	20	14	25	39	1.91
368943--369073	40	3.3	40	79	8	133	19	15	25	39	1.91
370118--370189	15	4.9	15	84	3	101	51	1	0	47	1.09
370175--370269	22	4.3	22	65	15	61	38	0	10	50	1.37
370131--370283	66	2.3	66	80	6	175	43	0	6	49	1.33
370199--370229	13	2.4	13	94	0	53	41	0	3	54	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
370212--370356	22	5.3	29	66	31	97	36	0	9	53	1.39
370212--371289	53	20.4	53	73	17	765	34	0	12	52	1.43
370309--371148	78	10.7	78	73	16	391	34	0	12	52	1.44
370497--370536	21	1.9	21	94	0	71	37	2	10	50	1.50
370546--370589	21	2.1	21	100	0	88	34	0	13	52	1.41
370601--370693	22	3.9	22	70	24	80	35	0	12	51	1.40
370673--370778	31	3.7	31	77	22	131	36	0	10	52	1.36
370916--371005	22	4.0	22	77	8	99	33	2	13	51	1.53
370994--371046	14	3.5	14	72	18	52	37	0	5	56	1.23
370985--371069	32	2.7	32	94	0	152	35	1	10	52	1.43
371080--371176	30	3.2	29	74	12	88	32	0	11	55	1.35
371091--371180	30	2.9	31	86	8	130	36	0	11	52	1.37
371237--371281	22	2.1	22	95	4	83	37	0	13	48	1.42
382464--382892	223	1.9	219	90	6	688	45	7	7	38	1.62
382958--383002	19	2.3	20	85	14	67	55	8	17	17	1.67
385129--385376	122	2.0	122	97	2	473	36	4	27	31	1.76
385568--385631	32	2.0	33	84	3	85	28	1	46	23	1.61
387077--387125	24	2.1	24	96	3	91	36	8	12	42	1.72
387547--388961	396	3.6	396	95	2	2519	37	15	15	32	1.89
387547--388961	199	7.1	199	95	2	2541	37	15	15	32	1.89
389235--389263	15	1.9	15	100	0	58	20	37	6	34	1.80
389432--389537	52	2.0	53	98	1	205	23	15	21	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
390434--390495	18	3.4	18	88	0	88	38	6	33	20	1.79
390434--390495	6	10.3	6	83	0	61	38	6	33	20	1.79
390449--390499	3	17.0	3	83	0	66	37	3	33	25	1.74
390437--390499	12	5.2	12	90	0	81	36	6	33	23	1.80
391853--392338	183	2.7	182	95	1	861	34	14	15	35	1.88
394885--394946	22	2.8	22	90	2	88	37	6	19	37	1.78
394885--394956	23	3.2	22	88	4	90	36	5	19	38	1.75
404977--405006	11	2.7	11	94	0	51	23	20	20	36	1.95
406570--406641	24	3.0	24	83	0	90	20	11	18	50	1.77
407227--407285	25	2.3	27	80	13	72	33	8	11	45	1.71
407715--407773	31	1.9	31	86	6	84	35	1	6	55	1.36
413691--413794	47	2.2	47	94	0	181	29	4	19	46	1.70
414004--414211	106	2.0	106	97	0	389	27	7	26	37	1.84
418537--418569	17	1.9	17	93	0	57	48	3	3	45	1.33
427751--427837	18	4.8	18	88	0	129	19	21	33	25	1.97
431506--431556	17	3.0	16	83	13	66	50	1	3	43	1.31
431557--431587	12	2.5	13	94	5	55	70	0	3	25	1.02
436373--436400	13	2.2	13	100	0	56	14	28	0	57	1.38
436623--436662	21	1.9	21	85	10	55	57	0	0	42	0.98
439270--439345	34	2.2	35	90	2	118	32	27	7	31	1.85
439700--439802	42	2.4	44	80	12	124	51	1	0	46	1.12
439700--439820	41	2.8	44	76	21	121	49	2	0	47	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
443893--443936	21	2.1	21	100	0	88	40	13	4	40	1.65
447420--447473	19	2.8	19	75	10	65	27	27	18	25	1.98
447529--447581	20	2.5	22	81	6	56	37	20	15	26	1.92
454775--454817	16	2.7	16	96	0	77	34	11	0	53	1.37
457697--457782	26	3.2	26	67	12	66	60	10	9	19	1.56
457675--457782	54	2.0	54	87	0	153	60	9	10	20	1.56
459252--459289	3	12.7	3	100	0	76	68	0	0	31	0.90
459738--460032	136	2.2	135	87	2	425	25	21	17	34	1.95
460132--460239	42	2.6	40	78	11	110	29	19	24	26	1.98
460242--460390	56	2.6	57	82	8	176	28	14	27	30	1.95
460357--460523	85	2.0	85	89	0	253	32	15	25	26	1.96
460650--460902	52	4.7	53	80	7	228	42	16	9	31	1.81
460656--460897	51	4.5	53	80	7	249	41	17	9	32	1.81
460662--460897	104	2.2	108	81	8	268	41	16	9	32	1.80
460899--460985	39	2.2	38	88	6	129	37	17	14	29	1.90
460958--461090	36	3.6	36	75	6	113	39	12	19	27	1.88
461097--461258	66	2.5	65	84	3	209	37	11	21	29	1.89
461012--461211	36	5.7	35	68	13	128	36	12	22	28	1.91
461418--461496	37	2.2	35	80	8	95	44	7	18	29	1.78
461429--461498	37	1.9	36	88	2	104	41	7	20	31	1.79
461364--461702	103	3.3	103	90	0	491	42	9	18	30	1.81
461524--461600	37	2.1	36	87	2	109	46	6	16	29	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
461627--461702	37	2.0	38	89	2	118	47	6	17	28	1.72
462066--462096	16	1.9	16	100	0	62	19	0	22	58	1.40
463059--463105	2	23.5	2	100	0	94	51	48	0	0	1.00
464014--464057	22	2.0	22	86	0	61	40	11	20	27	1.86
464023--464084	28	2.2	28	82	2	72	46	12	19	20	1.83
466968--467091	53	2.4	52	86	4	162	57	9	13	19	1.64
468552--468591	3	13.3	3	100	0	80	67	0	0	32	0.91
470955--470990	14	2.6	14	100	0	72	25	33	22	19	1.97
472884--473083	96	2.1	96	86	1	285	27	13	16	43	1.85
479573--479624	16	3.2	17	72	22	58	42	0	23	34	1.54
481972--482003	2	16.0	2	100	0	64	50	0	0	50	1.00
483616--483679	30	2.1	30	100	0	128	43	20	14	21	1.87
485541--485600	15	4.1	15	79	12	70	38	8	18	35	1.81
485541--485600	29	2.0	30	93	3	104	38	8	18	35	1.81
485688--485873	28	6.3	29	68	24	97	51	2	0	46	1.13
485770--485824	17	3.1	17	73	14	56	45	1	0	52	1.11
485775--485936	27	5.9	28	70	22	103	52	0	0	46	1.09
485745--485824	37	2.1	40	86	11	114	47	1	0	51	1.08
485758--485823	19	3.5	20	72	16	59	48	1	0	50	1.10
485813--485850	18	2.1	18	90	0	58	55	0	0	44	0.99
485754--485832	37	2.1	37	81	9	99	53	1	0	45	1.08
485824--485943	23	5.3	23	73	17	90	53	0	0	45	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
485784--485935	26	6.0	27	68	23	98	52	0	0	46	1.10
485850--485938	45	2.0	45	85	8	121	51	0	1	47	1.08
486132--486250	42	2.8	42	97	0	220	46	19	18	15	1.85
502889--502951	30	2.1	30	97	2	119	19	20	9	50	1.74
504440--504471	2	16.0	2	100	0	64	50	0	0	50	1.00
504727--504874	56	2.5	59	82	5	176	33	20	4	41	1.72
512131--512173	16	2.7	16	92	0	68	20	13	27	37	1.91
514994--515063	27	2.6	27	78	17	74	30	2	5	61	1.34
519840--519898	27	2.2	26	85	8	75	47	20	10	22	1.79
519840--519903	26	2.4	26	84	7	76	46	20	10	21	1.81

Tables:   1   2   3   4   5