genome.fa.s7853.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007853.1 Hibiscus syriacus cultivar Beakdansim tig00110213_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2309479

Tables:   1   2   3   4   5   6   7   8   

This is table  2  of  8  ( 900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
300794--300825	16	2.0	16	100	0	64	25	25	18	31	1.98
305036--305061	13	2.0	13	100	0	52	7	53	30	7	1.57
305769--305811	3	14.3	3	80	9	52	58	0	0	41	0.98
305758--305812	24	2.3	23	80	14	67	54	0	0	45	0.99
305760--305811	22	2.4	21	81	12	52	55	0	0	44	0.99
305992--307010	76	13.4	76	96	0	1869	35	21	21	21	1.96
305992--307010	379	2.7	381	97	0	1889	35	21	21	21	1.96
307670--307724	22	2.5	22	90	0	92	40	12	10	36	1.79
310397--310742	83	4.2	83	98	0	647	35	20	14	29	1.93
316796--316832	16	2.4	16	86	13	51	70	0	0	29	0.88
318273--318298	13	2.0	13	100	0	52	7	53	30	7	1.57
319010--319054	11	4.0	11	88	8	56	60	0	0	40	0.97
319008--319054	3	16.3	3	82	8	62	59	0	0	40	0.97
319027--319083	21	2.7	22	76	7	57	49	0	0	50	1.00
327754--328125	106	3.5	106	92	0	602	47	15	8	29	1.74
327619--328154	212	2.5	218	81	4	622	47	16	7	27	1.75
328706--328743	15	2.6	15	87	4	51	50	13	0	36	1.42
335654--335678	2	12.5	2	100	0	50	52	0	0	48	1.00
341294--341329	2	18.0	2	100	0	72	50	0	0	50	1.00
346302--346335	7	4.9	7	92	0	50	14	8	41	35	1.77
351809--351944	51	2.7	51	88	0	182	32	27	19	20	1.97
365038--365123	31	2.9	28	75	11	82	40	6	18	33	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
370248--370284	16	2.3	16	95	0	65	10	10	18	59	1.59
372252--372293	22	1.9	22	100	0	84	35	19	21	23	1.96
400469--400555	45	1.9	45	81	9	106	37	8	9	44	1.66
400565--400612	20	2.3	20	78	3	51	43	4	10	41	1.58
402864--402913	15	3.3	15	82	2	55	64	0	0	36	0.94
402870--402916	17	2.6	18	80	16	53	61	0	0	38	0.96
403637--403761	36	3.5	35	91	4	162	42	2	6	48	1.41
403846--403952	35	3.1	33	78	16	92	48	5	0	44	1.32
406213--406246	2	17.0	2	100	0	68	50	0	0	50	1.00
406294--406324	15	2.1	15	93	0	53	32	16	35	16	1.91
407535--407594	3	20.3	3	87	3	77	65	3	1	30	1.19
419751--419795	11	4.2	11	86	11	58	37	0	0	62	0.96
419768--419841	2	40.0	2	82	15	97	47	0	1	51	1.09
419759--419841	11	7.8	11	86	10	104	45	0	1	53	1.08
419768--419841	13	5.7	14	84	13	97	47	0	1	51	1.09
420374--420406	16	2.0	17	88	5	50	30	3	0	66	1.06
421728--421753	13	2.0	13	100	0	52	46	0	0	53	1.00
424023--424096	29	2.5	29	77	16	73	58	12	13	16	1.64
425860--425905	2	24.0	2	91	8	78	50	0	0	50	1.00
427236--427493	129	2.0	129	96	1	482	40	10	11	37	1.75
437348--437387	20	2.0	20	95	0	71	10	7	25	57	1.57
438731--438785	22	2.5	21	82	11	67	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
441644--441676	13	2.6	13	85	4	50	54	0	0	45	0.99
441644--441691	25	2.0	24	84	12	62	52	2	0	45	1.12
443698--443894	98	2.1	94	89	4	304	26	13	12	47	1.78
445575--445702	64	2.0	64	95	0	229	35	12	33	18	1.89
448549--448955	5	81.6	5	99	0	735	22	0	37	40	1.54
448943--449557	5	122.8	5	91	6	982	58	0	1	40	1.05
449542--449681	39	3.7	39	82	10	175	47	1	5	45	1.35
449572--449705	35	3.7	37	83	9	134	46	1	5	47	1.34
449572--449705	37	3.7	36	79	13	132	46	1	5	47	1.34
449710--449752	17	2.4	18	80	7	52	23	2	2	72	1.08
449795--449847	26	2.0	26	85	7	72	32	26	30	11	1.91
453929--453988	20	2.8	21	87	7	77	18	26	33	21	1.96
457779--457820	22	1.9	22	85	9	59	33	9	2	54	1.46
460723--460754	13	2.5	13	95	5	57	37	0	0	62	0.95
464665--464717	17	3.1	17	80	2	52	13	0	11	75	1.05
465377--465458	33	2.6	32	84	7	98	40	7	15	36	1.76
465366--465458	15	6.1	15	73	14	82	40	7	17	34	1.77
465662--465728	33	2.1	32	86	8	91	43	0	4	52	1.21
465770--465832	23	2.7	23	80	5	63	46	1	1	50	1.20
465816--466007	29	6.9	29	69	22	112	50	1	0	48	1.11
465808--465860	20	2.7	20	75	16	56	49	1	0	49	1.12
465817--465880	28	2.3	25	84	12	65	50	1	0	48	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
465893--465992	18	5.9	17	67	17	57	45	1	1	53	1.14
465934--465984	6	8.5	6	76	8	50	50	0	1	47	1.12
465934--465985	21	2.5	21	79	14	63	51	0	1	46	1.12
466126--466242	42	2.8	42	88	1	171	47	17	17	17	1.82
468475--468671	98	2.1	94	89	4	304	26	13	12	47	1.78
482757--482822	32	2.1	32	100	0	132	24	18	6	51	1.68
486038--486064	14	1.9	14	100	0	54	0	14	0	85	0.61
486915--487006	3	30.7	3	86	0	121	65	0	2	32	1.05
487255--488107	113	7.5	113	92	2	1230	28	19	12	38	1.89
488793--488933	50	2.8	50	98	0	273	39	21	14	25	1.91
488843--489213	133	2.8	133	99	0	733	36	21	14	28	1.92
503092--503184	3	31.7	3	86	2	127	64	0	2	33	1.06
506372--506403	14	2.3	14	94	0	55	37	6	3	53	1.42
518946--519006	23	2.7	23	82	2	70	49	8	18	24	1.74
526630--526972	171	2.0	173	97	2	649	31	14	20	34	1.92
532354--532383	7	4.4	7	95	4	53	63	0	0	36	0.95
544432--544467	19	1.9	19	88	5	56	22	22	8	47	1.77
549592--549719	64	2.0	65	90	1	204	28	16	25	29	1.97
549595--549745	65	2.3	64	86	1	203	29	16	25	28	1.97
549705--549762	17	3.3	17	92	4	89	25	17	32	24	1.96
549659--549818	82	2.0	82	83	7	209	27	16	25	31	1.96
553651--553793	75	1.9	75	86	1	207	23	30	23	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
559569--559608	21	1.9	21	89	0	62	25	40	25	10	1.86
562168--562330	73	2.3	71	83	6	195	23	30	23	22	1.99
567487--567665	65	2.8	64	86	1	241	27	17	26	29	1.97
567616--567662	19	2.5	19	83	10	62	25	17	31	25	1.97
567506--567712	65	3.2	62	81	10	211	27	16	25	30	1.97
567882--567921	20	2.0	21	85	14	57	45	7	5	42	1.54
573255--573370	59	2.0	59	83	6	146	37	13	16	32	1.88
585081--585215	71	1.9	71	93	0	234	41	11	8	39	1.70
585237--585351	54	2.1	54	96	0	212	44	6	2	46	1.42
590311--590414	9	12.2	9	71	18	71	52	7	0	39	1.30
590351--590414	2	34.0	2	75	22	59	51	4	0	43	1.22
590311--590413	15	6.3	17	70	18	76	53	7	0	38	1.30
590431--590735	36	8.4	36	76	9	271	40	11	5	42	1.64
590431--590725	70	4.1	71	78	9	242	39	11	5	43	1.64
590706--590751	24	2.0	24	86	4	67	43	13	2	41	1.55
598924--599123	93	2.1	94	89	1	303	41	5	8	45	1.58
599104--599141	18	2.1	18	90	0	58	18	5	7	68	1.34
599324--599357	16	2.1	16	89	10	52	55	0	2	41	1.15
601284--601308	3	8.3	3	100	0	50	68	0	0	32	0.90
626159--626260	38	2.7	38	80	5	118	48	12	6	32	1.68
627546--627589	23	1.9	23	90	0	70	56	9	2	31	1.43
634827--634884	22	2.6	23	73	18	68	53	3	0	43	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
634928--634969	20	2.2	18	87	12	57	38	4	4	52	1.44
635528--635579	14	4.0	14	73	19	58	9	13	21	55	1.66
635518--635570	24	2.2	24	86	6	72	9	16	24	49	1.76
635529--635579	24	2.1	24	92	0	84	9	11	21	56	1.63
636590--636628	16	2.4	16	95	0	69	10	12	20	56	1.65
636693--636723	16	1.9	16	93	0	53	12	12	22	51	1.74
651079--651218	36	3.9	35	84	6	192	17	22	20	39	1.93
676293--676364	30	2.4	30	84	9	85	29	29	11	30	1.91
676293--676360	31	2.2	31	84	7	86	26	29	11	32	1.92
676374--676465	31	3.1	29	89	4	130	36	16	23	22	1.94

Tables:   1   2   3   4   5   6   7   8