genome.fa.s7853.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007853.1 Hibiscus syriacus cultivar Beakdansim tig00110213_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2309479

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2201340--2201447	32	3.7	31	74	25	126	35	0	12	52	1.38
2201373--2201415	22	2.0	22	95	0	77	34	0	11	53	1.37
2201265--2201684	134	3.1	134	93	3	682	34	0	12	53	1.38
2201418--2201465	22	2.4	18	73	23	51	33	0	14	52	1.42
2201474--2201667	32	6.7	32	74	21	203	35	0	10	53	1.36
2201511--2201603	22	3.8	22	71	24	78	37	0	10	51	1.37
2201479--2201786	54	5.6	54	80	8	345	36	0	11	52	1.40
2201718--2201765	23	2.4	19	78	21	53	35	0	12	52	1.40
2201725--2201770	23	2.0	23	100	0	92	39	0	13	47	1.42
2201795--2201853	31	1.9	31	92	0	100	44	8	6	40	1.61
2202378--2202826	229	2.0	227	94	0	781	45	8	6	39	1.60
2202892--2202938	20	2.4	19	86	10	67	57	10	14	17	1.65
2205402--2205467	33	2.0	33	87	0	96	28	1	45	24	1.62
2207261--2207304	19	2.4	19	92	3	72	31	2	9	56	1.43
2207387--2207813	199	2.1	199	95	0	764	36	15	15	33	1.89
2210050--2210534	181	2.7	184	96	1	904	34	14	15	34	1.89
2213049--2213111	23	2.7	23	90	0	90	36	6	19	38	1.77
2213049--2213121	23	3.2	23	86	3	85	35	5	19	39	1.75
2213267--2213332	29	2.2	30	82	12	75	51	4	0	43	1.22
2213477--2213539	23	2.7	23	90	0	90	36	6	19	38	1.77
2213477--2213549	23	3.2	23	86	3	85	35	5	19	39	1.75
2213907--2213969	23	2.7	23	90	0	90	36	6	19	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2213907--2213979	23	3.2	23	86	3	85	35	5	19	39	1.75
2212950--2214251	430	3.0	430	98	0	2538	39	8	12	39	1.74
2223747--2223793	23	2.1	22	84	4	58	36	10	19	34	1.86
2224265--2224327	23	2.7	23	92	0	99	38	20	4	36	1.74
2224746--2224806	23	2.7	23	92	0	95	37	21	4	36	1.75
2225223--2225285	23	2.7	23	92	0	99	38	20	4	36	1.74
2225704--2225766	23	2.7	23	92	0	99	38	20	4	36	1.74
2223867--2227928	482	8.5	481	97	0	7522	40	10	7	41	1.68
2226186--2226248	23	2.7	23	92	0	99	38	20	4	36	1.74
2226669--2226731	23	2.7	23	92	0	99	38	20	4	36	1.74
2223867--2227928	965	4.2	963	97	0	7544	40	10	7	41	1.68
2227151--2227213	23	2.7	23	90	0	90	38	19	4	38	1.73
2227632--2227687	23	2.4	23	90	0	94	37	21	5	35	1.76
2227727--2228436	228	3.1	229	95	1	1268	39	8	7	44	1.62
2231443--2231500	24	2.4	24	76	0	62	60	13	3	22	1.49
2231495--2231549	24	2.3	23	75	9	58	47	5	14	32	1.67
2233237--2233291	23	2.3	24	75	6	58	54	7	0	38	1.28
2236542--2236617	32	2.4	32	95	0	134	10	11	39	38	1.77
2236293--2236802	285	1.8	280	88	3	788	27	12	19	40	1.87
2237337--2237464	59	2.2	59	100	0	256	32	10	12	43	1.77
2243760--2243815	17	3.3	17	69	18	53	32	12	8	46	1.73
2243737--2243815	34	2.3	34	97	0	149	35	12	7	44	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2245636--2245661	2	13.0	2	100	0	52	50	0	0	50	1.00
2247732--2247761	16	1.9	15	93	6	51	33	6	0	60	1.23
2257460--2257534	30	2.5	30	80	6	80	44	0	6	49	1.28
2264866--2264916	20	2.6	20	84	3	59	43	3	1	50	1.31
2265210--2265323	59	1.9	59	89	1	174	31	22	6	39	1.79
2267235--2267277	18	2.3	18	88	4	59	62	0	0	37	0.95
2269061--2269157	24	4.0	24	69	5	79	43	15	17	23	1.87
2271258--2271305	21	2.2	21	82	10	62	43	10	16	29	1.81
2271347--2271825	235	2.0	237	91	5	779	29	22	23	25	1.99
2272798--2272868	37	1.9	36	82	2	88	47	1	14	36	1.52
2273977--2274047	30	2.4	30	97	0	133	43	8	22	25	1.81
2275582--2275618	14	2.6	15	83	12	51	62	13	5	18	1.50
2285441--2285478	2	19.0	2	100	0	76	50	0	0	50	1.00
2285951--2286027	37	2.1	37	85	4	102	48	1	3	46	1.28
2287567--2287602	18	1.9	19	88	5	56	61	2	2	33	1.25
2304508--2304533	13	2.0	13	100	0	52	23	30	7	38	1.83

Tables:   1   2   3   4   5   6   7   8

The End!