genome.fa.s7863.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007863.1 Hibiscus syriacus cultivar Beakdansim tig00110234_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1653362

Tables:   1   2   3   4   5   6   7   8   

This is table  3  of  8  ( 912 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
443438--443657	105	2.1	105	81	1	253	35	9	12	42	1.75
444251--444296	23	2.1	23	88	11	71	47	0	0	52	1.00
445065--445093	3	9.7	3	100	0	58	31	0	0	68	0.89
446666--446710	5	8.8	5	82	2	54	15	4	4	75	1.12
448549--448587	19	2.0	20	95	5	71	12	25	35	25	1.92
448983--449023	19	2.2	19	100	0	82	39	9	9	41	1.71
450831--450868	13	2.9	14	84	11	53	44	7	18	28	1.78
451336--451391	22	2.7	20	86	10	85	21	25	32	21	1.98
451336--451412	22	3.7	20	81	13	84	24	23	31	20	1.98
455218--455258	21	1.9	22	90	5	66	29	7	7	56	1.54
459575--459618	12	3.5	12	87	6	52	29	4	2	63	1.26
460482--460534	27	1.9	28	81	11	65	77	1	15	5	1.04
462972--463105	66	2.0	67	91	1	216	28	16	14	40	1.88
463136--463590	137	3.3	135	79	4	470	28	28	15	27	1.96
476548--476589	16	2.5	17	92	7	77	30	11	4	52	1.59
481467--481518	27	1.9	27	88	0	77	34	28	11	25	1.91
485025--485216	95	2.0	95	97	0	366	31	15	10	42	1.81
485672--485732	25	2.4	25	100	0	122	24	9	39	26	1.86
488194--488241	26	1.9	25	87	8	71	58	20	10	10	1.60
488223--488254	17	1.9	17	93	6	57	59	25	12	3	1.48
492472--492513	19	2.3	19	87	4	59	33	19	26	21	1.97
494701--494734	12	2.8	12	90	0	59	17	23	26	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
495951--496012	33	1.9	32	90	3	97	38	17	9	33	1.83
496697--497089	181	2.2	176	79	9	388	32	15	11	40	1.83
497481--497510	10	3.0	10	95	0	51	16	10	33	40	1.82
499430--499797	183	2.0	182	98	0	718	30	17	17	33	1.93
503799--503837	13	2.9	14	88	7	62	43	38	0	17	1.50
504683--504795	30	3.8	30	69	11	97	22	10	9	57	1.61
504700--504778	29	2.6	31	74	9	92	25	8	6	59	1.51
517387--517487	2	51.5	2	96	3	188	50	0	0	49	1.00
523528--523552	10	2.5	10	100	0	50	64	0	0	36	0.94
524342--524371	15	2.0	15	100	0	60	46	13	6	33	1.69
540477--540826	187	1.9	187	82	5	440	32	11	12	44	1.77
545450--545490	21	2.0	21	90	0	64	21	43	29	4	1.73
554545--554614	36	2.0	35	91	5	115	45	18	5	30	1.72
559065--559144	36	2.3	35	85	6	108	45	18	5	31	1.71
560980--561033	20	2.7	19	75	8	63	33	31	18	16	1.93
561062--561114	20	2.7	20	88	5	72	43	22	18	15	1.87
561134--561165	16	1.9	17	93	6	57	34	25	12	28	1.92
561124--561330	40	5.2	40	79	8	192	38	21	17	22	1.93
561124--561330	20	10.4	20	69	6	134	38	21	17	22	1.93
561151--561330	40	4.4	41	85	1	229	39	21	17	22	1.92
561179--561351	20	8.7	19	74	9	116	37	21	19	21	1.94
561428--561466	19	2.0	20	95	5	71	35	17	20	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
561431--561476	19	2.4	19	85	3	56	34	17	21	26	1.95
562325--562380	24	2.3	24	90	0	85	25	14	19	41	1.89
564789--564978	19	10.1	19	84	7	156	40	19	22	17	1.92
564789--564882	40	2.3	40	87	3	136	35	22	21	21	1.96
564884--564978	19	5.0	19	97	0	163	44	16	24	14	1.86
564988--565071	33	2.5	33	92	1	132	14	22	19	44	1.86
565054--565097	20	2.2	20	100	0	88	18	25	20	36	1.95
565054--565106	20	2.7	20	93	0	79	20	24	18	35	1.95
565204--565240	14	2.6	14	86	0	56	48	21	0	29	1.50
566614--566706	42	2.2	42	80	3	107	22	17	39	20	1.92
567189--567273	20	4.2	20	87	0	116	41	18	16	23	1.90
567185--567276	40	2.3	40	92	0	148	41	18	17	22	1.90
567306--567349	19	2.3	19	92	0	70	11	15	29	43	1.82
567315--567382	19	3.8	19	81	18	92	7	16	29	47	1.73
567340--567398	14	3.9	14	74	20	55	8	18	25	47	1.77
567321--567445	33	3.8	33	90	2	164	8	20	24	45	1.80
567368--567445	14	4.8	17	75	21	78	10	24	20	44	1.82
567533--567912	94	4.1	94	90	1	566	48	17	11	22	1.79
569610--569680	20	3.6	19	79	5	70	38	21	23	16	1.93
569700--569778	20	3.9	21	85	5	85	11	20	16	51	1.74
570333--570547	20	10.6	20	77	9	184	18	16	25	39	1.91
570335--570547	81	2.6	81	87	1	309	18	15	25	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
570335--570532	41	4.9	41	89	1	317	18	16	25	39	1.91
570335--570608	122	2.2	122	83	2	336	18	16	24	39	1.91
570332--570608	20	13.6	20	68	15	86	18	16	24	39	1.91
570576--570669	42	2.3	42	76	9	95	21	21	22	35	1.96
570658--570711	20	2.7	19	75	8	63	16	18	31	33	1.93
571289--571380	30	3.0	30	80	7	96	39	3	13	44	1.59
572967--573010	20	2.1	21	84	12	56	40	27	4	27	1.75
573124--573191	30	2.2	31	86	2	102	45	5	5	42	1.52
574666--574768	36	2.9	36	98	0	197	41	16	16	25	1.89
575538--575587	23	2.2	23	82	3	66	42	18	2	38	1.61
582447--582548	36	2.8	36	88	4	152	40	16	15	27	1.89
584431--584456	10	2.6	10	100	0	52	46	7	7	38	1.61
588225--588281	29	1.9	30	85	3	80	29	22	7	40	1.80
588915--588942	2	14.0	2	100	0	56	50	0	0	50	1.00
591921--591959	13	3.0	13	88	0	60	30	23	15	30	1.95
598361--598391	16	1.9	16	93	0	53	29	16	19	35	1.93
600490--600520	16	1.9	16	93	0	53	22	6	29	41	1.78
606676--606725	22	2.3	22	92	0	82	44	10	22	24	1.83
606746--607007	138	1.9	137	86	6	372	42	16	12	29	1.84
616863--616900	10	4.1	9	90	10	51	65	0	10	23	1.23
616854--616891	18	2.1	19	85	14	53	71	0	7	21	1.11
617070--617100	2	16.0	2	93	6	55	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
618374--618605	106	2.2	107	88	0	331	21	17	25	34	1.95
619016--619142	31	3.9	31	73	16	89	33	12	21	32	1.91
618919--619110	67	2.8	67	85	3	251	38	12	21	28	1.90
619065--619178	32	3.5	32	89	6	158	32	11	19	36	1.87
619219--619573	36	10.4	36	71	17	183	39	12	18	30	1.87
619345--619403	30	2.0	30	86	6	84	32	10	16	40	1.82
619358--619662	102	3.0	102	94	1	504	37	13	19	30	1.89
620860--621209	183	1.9	183	97	0	655	29	21	21	27	1.99
625150--625200	21	2.4	21	84	12	61	68	0	7	23	1.15
625371--625395	2	12.5	2	100	0	50	52	0	0	48	1.00
628666--628730	28	2.2	30	78	10	73	40	6	0	53	1.26
629655--629690	14	2.6	14	95	0	63	25	13	0	61	1.33
631990--632033	21	2.1	21	83	8	54	40	13	4	40	1.65
633317--633413	24	4.2	23	82	11	101	76	3	19	1	0.98
633322--633413	5	18.4	5	73	23	70	76	3	19	1	0.99
633340--633410	33	2.2	34	83	16	98	76	1	22	0	0.87
633351--633413	9	6.9	9	78	18	60	77	1	20	0	0.85
635381--635495	53	2.2	54	85	6	155	29	8	20	41	1.82
635534--635599	33	2.0	33	87	0	96	42	10	13	33	1.79
636657--637037	59	6.5	59	87	0	465	26	22	15	35	1.94
637007--637180	93	1.9	93	81	2	215	32	21	16	29	1.95
641305--641365	26	2.3	27	94	2	106	18	22	24	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
646487--646521	18	1.9	18	88	0	52	54	8	17	20	1.68
649410--649444	14	2.5	14	100	0	70	20	28	14	37	1.91
649433--649470	18	2.1	18	85	9	51	34	23	5	36	1.78
651584--651633	20	2.5	19	84	12	64	36	24	18	22	1.95
652706--652792	44	2.0	44	100	0	174	20	11	22	44	1.84
654501--654556	20	2.8	20	89	5	78	37	25	16	21	1.93
655873--655911	18	2.2	18	85	0	51	64	2	0	33	1.08
660744--660781	11	3.5	11	92	7	60	2	5	28	63	1.30
662385--662444	26	2.3	26	91	0	93	41	20	6	31	1.78
662651--662795	43	3.4	41	73	12	132	34	19	20	25	1.96

Tables:   1   2   3   4   5   6   7   8