genome.fa.s7863.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007863.1 Hibiscus syriacus cultivar Beakdansim tig00110234_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1653362

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 912 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1535850--1536085	38	6.3	38	76	13	186	44	4	5	45	1.46
1535850--1536061	75	2.8	75	75	16	202	45	3	5	45	1.43
1535979--1536003	12	2.1	12	100	0	50	40	8	8	44	1.63
1535884--1536122	71	3.2	74	82	9	247	45	4	6	43	1.49
1535884--1536123	73	3.2	74	81	12	222	45	4	6	44	1.49
1539530--1539569	21	1.9	21	89	0	62	10	25	40	25	1.86
1539552--1539612	20	2.9	21	87	7	79	18	26	34	21	1.96
1545711--1545762	3	17.7	3	80	11	63	25	0	0	75	0.81
1545711--1545768	15	4.1	15	77	20	63	24	0	0	75	0.80
1545693--1545769	24	3.1	24	82	14	79	25	1	1	71	1.01
1545711--1545769	12	5.2	11	90	8	75	23	0	0	76	0.79
1546334--1546764	214	2.0	214	100	0	862	26	14	31	28	1.95
1547186--1547219	14	2.4	14	100	0	68	26	20	0	52	1.46
1547979--1548037	17	3.5	17	70	9	57	37	3	49	10	1.54
1547972--1548041	34	2.1	34	97	0	131	40	2	48	8	1.49
1550906--1550957	21	2.5	21	81	3	61	38	19	25	17	1.93
1550946--1551059	20	5.7	20	83	6	113	31	25	18	24	1.97
1550943--1551059	61	1.9	61	85	0	162	33	24	17	23	1.97
1551573--1551652	18	4.5	18	74	17	78	46	25	17	11	1.81
1551648--1551832	19	10.1	19	75	14	165	11	21	22	44	1.85
1551648--1551832	33	5.1	38	78	12	165	11	21	22	44	1.85
1551775--1551832	20	2.9	20	80	10	64	13	24	18	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1553829--1553949	41	2.9	41	81	6	111	22	36	18	23	1.95
1553887--1553949	21	3.0	21	70	9	65	22	36	20	20	1.95
1555300--1555335	14	2.6	14	95	0	63	30	0	25	44	1.54
1555553--1555644	19	5.4	19	66	24	78	16	20	19	43	1.88
1555511--1555643	66	2.0	66	94	0	230	17	21	18	42	1.90
1555518--1555644	33	3.8	33	86	4	184	15	22	18	43	1.88
1558741--1558796	20	2.9	19	78	5	76	37	19	25	17	1.94
1558733--1558837	19	5.8	19	69	13	69	44	18	20	17	1.87
1558796--1558853	14	3.9	14	75	16	62	48	22	17	12	1.80
1558780--1558858	32	2.4	33	91	2	133	46	21	18	12	1.82
1558865--1558929	18	3.8	18	76	17	75	12	20	21	46	1.83
1558887--1558944	14	3.9	14	77	16	62	10	15	24	50	1.75
1558870--1558960	32	2.8	33	91	3	148	12	16	21	49	1.78
1558954--1558999	20	2.3	20	88	0	65	15	21	26	36	1.93
1559481--1559525	18	2.5	18	88	0	72	13	15	44	26	1.83
1560844--1560881	20	1.9	20	88	0	58	50	21	15	13	1.78
1561145--1561188	22	2.0	22	90	0	70	20	15	43	20	1.88
1561376--1561428	20	2.7	20	93	0	88	24	18	28	28	1.98
1561356--1561470	20	5.7	20	77	5	79	24	17	22	35	1.95
1561396--1561473	41	1.9	41	83	0	102	23	16	20	39	1.92
1561467--1561534	21	3.3	21	77	4	84	17	25	16	41	1.89
1561485--1561551	20	3.3	20	79	4	89	17	22	17	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1561459--1561551	41	2.3	41	96	0	168	19	24	16	39	1.91
1562616--1562676	7	9.3	7	98	1	94	0	60	0	39	0.97
1563971--1564033	3	22.0	3	76	20	64	31	0	0	68	0.90
1564077--1564178	33	3.1	33	84	6	109	44	14	9	31	1.78
1565038--1565247	65	3.2	64	79	9	230	32	24	17	26	1.97
1565219--1565267	19	2.6	19	84	9	57	24	28	20	26	1.99
1566872--1566975	45	2.3	45	98	0	199	33	23	16	26	1.95
1566961--1567013	19	2.8	19	94	0	97	30	30	16	22	1.96
1567046--1567116	19	3.7	19	100	0	142	26	35	21	16	1.95
1566961--1567161	103	2.0	102	83	6	255	29	26	18	25	1.98
1571455--1572917	110	13.5	110	90	2	2114	35	22	17	24	1.96
1571455--1572917	551	2.7	552	88	3	2156	35	22	17	24	1.96
1573025--1573304	81	3.4	79	77	9	265	29	26	20	24	1.99
1573625--1573680	23	2.5	21	86	11	76	30	0	0	69	0.89
1573625--1573682	13	4.4	13	78	20	66	29	0	0	70	0.87
1573741--1573833	33	2.8	33	83	6	125	41	18	10	29	1.84
1595472--1595552	42	1.9	42	94	0	144	30	8	14	45	1.75
1597839--1597880	15	2.6	16	85	7	50	61	4	2	30	1.29
1607044--1607070	5	5.4	5	100	0	54	18	18	18	44	1.87
1609911--1609985	32	2.3	32	81	0	87	32	18	10	38	1.85
1609924--1609991	32	2.1	32	88	0	100	29	14	14	41	1.86
1609937--1610000	32	2.0	32	84	6	85	31	15	14	39	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1611235--1611274	21	2.0	21	90	5	64	27	35	10	27	1.89
1617117--1617194	29	2.6	29	70	11	68	32	1	5	61	1.26
1618761--1618794	16	2.1	16	94	0	59	32	8	26	32	1.87
1624503--1624527	2	12.5	2	100	0	50	52	0	0	48	1.00
1641548--1641617	23	3.0	23	82	0	77	24	20	25	30	1.99
1645887--1645939	23	2.3	23	80	0	61	28	15	22	33	1.94

Tables:   1   2   3   4   5   6   7   8

The End!