genome.fa.s7863.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007863.1 Hibiscus syriacus cultivar Beakdansim tig00110234_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1653362

Tables:   1   2   3   4   5   6   7   8   

This is table  5  of  8  ( 912 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
883810--883834	2	12.5	2	100	0	50	0	0	48	52	1.00
887104--887608	173	2.9	175	82	6	560	27	16	14	41	1.87
887592--887708	20	5.8	20	72	4	83	28	17	14	39	1.89
891742--891849	23	4.8	22	85	8	96	24	22	19	34	1.97
891739--891826	34	2.6	33	83	5	97	26	21	20	31	1.98
891786--891869	11	7.4	11	75	7	78	17	23	21	36	1.94
891786--891870	23	3.7	23	98	0	161	18	23	21	36	1.95
892394--892430	15	2.5	15	90	0	56	29	45	13	10	1.77
893261--893324	7	9.3	7	71	10	51	42	32	1	23	1.64
893746--893915	5	34.2	5	97	2	317	40	0	0	60	0.97
894267--894329	11	5.9	11	71	14	51	39	3	0	57	1.15
894672--894711	19	2.1	19	100	0	80	15	30	35	20	1.93
894675--894717	19	2.3	19	91	0	68	16	20	39	23	1.92
897149--897206	18	3.4	18	73	17	52	65	6	1	25	1.27
898530--898559	3	10.3	3	92	7	53	66	0	0	33	0.92
898830--898888	17	3.4	17	73	17	57	18	23	8	49	1.75
898932--899479	113	4.9	113	84	2	717	28	19	14	38	1.90
898932--899479	226	2.4	226	94	0	947	28	19	14	38	1.90
900637--900692	19	2.9	19	81	7	78	55	5	8	30	1.53
907451--908019	285	2.0	284	96	1	1059	27	20	21	30	1.98
908312--908358	15	3.1	15	93	0	76	44	8	19	27	1.79
911665--911718	28	2.0	27	85	3	72	59	1	5	33	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
913886--913947	3	21.0	3	82	9	65	59	0	1	38	1.07
913900--913949	20	2.5	20	86	0	73	62	0	2	36	1.07
919445--919500	29	1.9	29	88	0	85	32	14	23	30	1.94
920384--920418	15	2.2	16	90	5	54	34	14	0	51	1.42
920500--920553	21	2.6	21	78	0	54	29	3	9	57	1.47
921885--922447	54	10.4	54	85	2	756	26	19	20	33	1.96
921890--922447	269	2.1	270	87	3	811	26	19	20	34	1.96
927980--928365	54	7.1	54	88	0	547	25	19	20	33	1.96
928806--928858	21	2.5	21	100	0	106	37	13	15	33	1.86
930806--930880	21	3.6	21	70	13	64	25	20	17	37	1.94
930914--930965	20	2.5	21	81	3	61	26	11	28	32	1.91
930914--930970	21	2.8	21	81	2	62	24	12	26	36	1.91
932603--932667	29	2.2	29	88	0	94	36	20	12	30	1.89
933364--933412	14	3.6	14	73	18	50	55	4	0	40	1.19
933376--933438	11	5.9	11	76	14	69	58	1	0	39	1.07
933364--933419	25	2.3	24	84	6	78	55	3	0	41	1.17
936045--936116	37	2.0	36	84	7	94	25	6	13	54	1.64
936315--936378	11	5.6	11	76	20	69	32	25	18	23	1.97
936309--936427	23	5.1	23	92	1	130	30	26	18	24	1.98
936341--936427	24	3.7	24	92	1	131	27	28	19	24	1.98
936434--936464	16	1.9	16	93	0	53	12	12	25	48	1.77
936483--936712	73	3.2	72	67	15	211	22	17	22	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
936438--936729	147	2.0	146	97	0	557	24	17	21	36	1.94
941833--941937	54	1.9	54	96	0	192	20	13	11	54	1.70
942400--942476	31	2.5	31	95	0	136	25	16	10	46	1.79
945381--945438	25	2.3	25	93	0	98	27	10	18	43	1.83
948526--948667	36	4.0	36	84	0	169	20	26	20	33	1.97
948514--948667	72	2.2	71	85	2	209	22	25	20	31	1.98
950676--950956	36	7.8	36	84	0	294	22	23	20	32	1.98
952925--953208	36	8.0	36	81	4	308	22	23	22	31	1.98
952927--953210	71	4.0	70	80	6	306	22	22	22	32	1.98
952925--953208	107	2.7	106	85	3	347	22	23	22	31	1.98
956122--956181	28	2.2	26	88	5	84	38	6	10	45	1.64
956271--956312	2	22.0	2	85	9	61	47	2	0	50	1.14
958262--958300	20	2.0	20	85	10	53	48	7	7	35	1.61
960495--960579	3	27.7	3	85	4	116	37	0	0	62	0.96
964858--964898	7	5.9	7	83	11	57	14	17	9	58	1.62
969071--969292	114	1.9	114	92	0	372	33	14	18	32	1.91
970145--970210	35	1.9	34	90	3	105	33	9	22	34	1.86
971282--971546	52	5.1	52	96	0	494	41	13	23	21	1.88
971282--971546	105	2.5	104	96	0	494	41	13	23	21	1.88
971910--971964	22	2.5	22	93	0	101	34	10	14	40	1.81
972479--972769	153	1.9	155	89	3	453	38	13	13	34	1.84
972796--974037	76	16.4	76	94	1	2147	23	19	21	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
972796--974037	151	8.2	152	95	1	2183	23	19	21	35	1.96
972796--974037	303	4.1	303	95	0	2186	23	19	21	35	1.96
974168--974276	3	35.7	3	85	3	146	37	0	0	61	1.02
980703--980779	39	1.9	39	89	5	118	29	20	11	37	1.88
982958--983001	2	22.0	2	100	0	88	50	0	0	50	1.00
983902--983990	32	2.8	32	80	0	97	29	16	13	40	1.87
986992--987037	20	2.3	20	96	0	83	26	30	15	28	1.96
986992--987047	20	2.8	20	91	0	76	26	30	14	28	1.95
989810--989849	21	1.9	21	94	0	71	25	25	22	27	2.00
991161--991209	20	2.5	20	89	0	71	28	30	12	28	1.93
997460--997516	23	2.5	23	94	2	98	21	35	22	21	1.96
999074--999110	18	2.1	18	90	10	58	45	24	29	0	1.53
1001409--1001451	22	2.0	22	85	0	59	27	16	23	32	1.96
1001644--1001982	165	2.0	169	93	6	593	33	16	7	41	1.78
1003592--1003652	20	3.2	20	93	6	101	44	0	45	9	1.37
1004900--1005100	108	1.9	105	89	5	316	53	9	6	30	1.58
1004901--1005126	108	2.1	103	83	6	281	54	9	5	30	1.56
1006686--1006864	86	2.1	87	95	2	324	22	8	9	59	1.56
1006857--1006909	24	2.2	24	90	6	81	9	20	15	54	1.68
1009070--1009185	52	2.2	52	87	3	162	12	20	32	33	1.91
1009227--1009286	6	9.7	6	79	13	50	78	1	1	18	0.92
1009242--1009286	21	2.1	21	87	0	63	77	2	0	20	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1009325--1009430	59	1.9	55	88	11	162	42	4	1	50	1.34
1009325--1009433	54	2.0	50	81	18	123	42	4	1	51	1.33
1009373--1009709	38	8.9	37	78	9	333	43	5	2	48	1.38
1009373--1009669	115	2.6	112	81	8	377	43	5	2	48	1.39
1009484--1009543	13	4.5	13	72	12	50	43	5	0	51	1.23
1009375--1009590	36	5.9	35	76	12	145	43	5	1	48	1.37
1009373--1009704	74	4.4	75	80	8	345	43	5	2	48	1.39
1009500--1009743	114	2.2	108	75	13	253	43	6	2	48	1.41
1014207--1014276	30	2.4	29	81	9	79	55	4	1	38	1.28
1024286--1024328	12	3.7	12	90	3	70	30	0	39	30	1.57
1027424--1027497	37	2.0	37	100	0	148	29	21	13	35	1.92
1027888--1027948	2	30.5	2	100	0	122	49	0	0	50	1.00
1033512--1033561	22	2.2	22	82	7	55	28	20	16	36	1.93
1033529--1033586	22	2.6	22	88	0	80	22	29	22	25	1.99
1035578--1035624	19	2.5	19	89	3	69	21	21	6	51	1.70
1042769--1042816	17	2.9	16	87	6	69	77	0	16	6	0.97
1042769--1042816	16	2.9	15	82	17	60	77	0	16	6	0.97
1043580--1043633	27	2.0	27	92	0	90	44	25	18	11	1.83
1044091--1044595	130	3.8	133	78	10	500	34	18	16	30	1.93
1044094--1044595	132	3.8	131	77	7	496	34	18	16	30	1.93
1044085--1044613	262	2.0	265	84	4	701	34	18	17	29	1.94
1044980--1045021	2	21.0	2	90	0	66	47	2	2	47	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1046088--1046220	59	2.5	52	78	14	144	21	15	27	36	1.93
1046114--1046234	59	2.1	59	91	0	197	24	14	23	36	1.93
1048270--1048311	21	2.0	21	85	0	57	21	33	11	33	1.90
1050265--1050385	50	2.4	50	95	0	215	35	0	12	51	1.46
1050617--1050754	59	2.6	52	73	18	129	21	16	23	37	1.93
1050648--1050768	59	2.1	59	91	0	197	24	16	22	36	1.94
1058357--1058406	23	2.2	23	88	0	73	46	14	16	24	1.83
1058363--1058414	23	2.3	23	86	0	68	44	17	15	23	1.86
1068356--1068489	29	4.6	29	82	1	144	20	16	6	56	1.62
1068356--1068436	14	5.6	14	74	10	56	20	12	7	59	1.57

Tables:   1   2   3   4   5   6   7   8