genome.fa.s7864.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007864.1 Hibiscus syriacus cultivar Beakdansim tig00110236_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1537186

Tables:   1   2   3   4   5   6   7   8   

This is table  2  of  8  ( 870 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
195209--195290	30	2.8	30	88	5	114	40	6	17	36	1.74
195451--195489	19	2.0	20	95	5	71	43	0	0	56	0.99
195686--195802	50	2.3	51	82	11	141	52	1	0	44	1.16
196982--197223	119	2.1	118	97	1	459	39	22	10	27	1.87
197753--197816	33	1.9	34	96	3	121	28	12	15	43	1.83
198294--198360	33	2.0	33	97	0	125	14	29	16	38	1.89
198994--199328	157	2.1	159	90	2	532	33	8	20	37	1.83
199309--199349	21	2.0	21	90	0	64	24	2	24	48	1.63
199853--199915	11	5.9	11	69	14	51	38	1	3	57	1.24
206075--206121	20	2.3	22	89	10	73	44	0	0	55	0.99
207484--207557	3	24.7	3	100	0	148	66	0	33	0	0.92
209721--209843	55	2.2	55	94	0	219	23	36	17	22	1.94
215536--215570	14	2.5	14	90	0	61	42	8	8	40	1.66
216236--216301	31	2.1	31	100	0	132	36	7	25	30	1.84
216670--216702	17	2.0	17	88	5	50	36	15	18	30	1.91
220617--220657	2	20.5	2	89	0	64	0	46	4	48	1.23
221735--221766	15	2.1	15	94	0	55	18	25	0	56	1.42
223180--223213	2	17.0	2	100	0	68	50	0	0	50	1.00
224110--224445	37	9.2	37	82	11	372	44	4	7	43	1.51
224189--224445	67	3.6	68	82	11	286	45	4	7	42	1.50
224256--224414	76	2.1	75	91	5	268	46	3	6	44	1.44
224182--224445	36	7.3	36	79	16	158	46	4	6	42	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
225684--225708	13	1.9	13	100	0	50	4	16	0	80	0.87
226598--226642	6	7.5	6	100	0	90	17	17	31	33	1.94
230537--230605	21	3.3	21	79	0	75	18	15	52	13	1.75
243311--244033	361	2.0	361	100	0	1446	28	16	23	32	1.96
248312--248352	18	2.3	18	91	0	64	17	43	2	36	1.62
249860--249937	39	2.0	39	97	0	147	21	23	16	38	1.93
250399--250434	6	6.5	6	81	18	51	47	0	0	52	1.00
250399--250430	16	2.0	16	100	0	64	50	0	0	50	1.00
256546--256570	3	8.3	3	100	0	50	0	36	0	64	0.94
262815--262867	20	2.5	21	88	11	74	35	18	20	24	1.95
262741--262963	94	2.4	91	81	6	241	34	15	22	27	1.94
263322--263526	79	2.6	79	93	0	338	36	11	24	28	1.90
263322--263555	79	3.0	79	89	1	335	35	11	24	28	1.90
263529--263745	45	4.8	45	86	2	292	41	10	19	28	1.84
263490--263744	90	2.8	89	84	2	305	40	10	20	28	1.86
267082--267169	24	3.7	24	87	0	122	22	18	21	37	1.94
268573--268665	44	2.1	46	82	11	113	47	6	21	24	1.74
271383--271407	2	12.5	2	100	0	50	0	0	52	48	1.00
275904--275990	23	3.7	23	80	3	102	24	22	25	27	2.00
285525--285586	22	2.7	23	85	5	81	25	33	24	16	1.95
305564--305590	10	2.7	10	100	0	54	11	0	7	81	0.87
309543--309622	14	6.1	14	67	24	59	16	12	16	55	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
309544--309621	24	3.2	24	83	3	102	16	11	15	56	1.67
309914--309953	10	4.0	10	90	0	62	7	12	22	57	1.60
309881--309932	27	2.0	26	84	3	68	11	7	19	61	1.53
309913--309952	20	2.0	20	95	0	71	7	15	22	55	1.65
312407--312440	12	2.9	12	86	4	52	50	8	11	29	1.69
316053--316122	34	2.1	32	86	5	95	22	30	15	31	1.95
316403--316444	21	2.0	21	90	0	66	23	28	23	23	2.00
316480--316523	21	2.1	21	100	0	88	13	27	45	13	1.81
316549--316628	21	4.1	21	75	18	82	13	27	38	20	1.90
316572--316601	15	2.0	15	100	0	60	13	26	33	26	1.93
316551--316622	36	2.0	36	88	0	108	15	27	36	20	1.93
319723--319764	21	2.0	21	90	0	66	23	28	23	23	2.00
319801--319844	21	2.1	21	100	0	88	13	27	45	13	1.81
319870--319949	21	4.1	21	75	18	82	13	27	38	20	1.90
319893--319922	15	2.0	15	100	0	60	13	26	33	26	1.93
319872--319943	36	2.0	36	88	0	108	15	27	36	20	1.93
321314--321497	85	2.2	82	92	2	296	29	1	13	55	1.47
323869--323917	22	2.2	22	85	10	64	59	14	4	22	1.52
324277--324305	14	2.1	14	100	0	58	13	27	10	48	1.75
324414--324464	21	2.4	21	90	6	77	25	41	3	29	1.73
325853--325894	18	2.3	18	95	0	75	45	4	14	35	1.66
326330--326356	3	9.0	3	100	0	54	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
333697--333866	90	1.9	90	84	4	227	31	15	17	35	1.91
335012--335157	51	2.9	51	92	0	229	34	19	23	21	1.96
336521--336954	123	3.6	123	84	6	544	42	14	16	26	1.86
336897--337014	57	2.1	57	87	1	166	48	7	22	22	1.75
336779--337137	180	2.0	175	85	3	477	43	13	19	24	1.86
336954--337472	123	4.2	123	88	1	734	40	14	18	25	1.89
338956--338981	5	5.2	5	100	0	52	23	0	0	76	0.78
344198--344268	3	23.0	3	80	8	72	39	0	1	59	1.06
344214--344268	13	4.4	14	80	17	59	38	0	1	60	1.08
345760--345789	12	2.6	11	90	10	51	20	0	0	80	0.72
346103--346142	2	20.0	2	100	0	80	50	0	0	50	1.00
347162--347251	46	1.9	48	86	4	130	38	11	18	31	1.86
349017--349070	22	2.6	20	85	5	63	18	9	7	64	1.45
349027--349090	20	3.1	20	79	4	65	17	14	7	60	1.56
352209--352257	19	2.7	17	87	9	62	22	20	32	24	1.98
355036--355107	21	3.4	21	79	9	67	23	20	26	29	1.99
360838--360983	65	2.2	64	82	9	172	26	17	22	34	1.96
363300--363562	132	2.0	131	96	0	490	42	12	15	28	1.85
368852--368889	14	2.7	14	100	0	76	36	15	10	36	1.82
379300--379337	2	19.0	2	100	0	76	50	0	0	50	1.00
381026--381077	28	1.9	26	88	7	77	73	1	5	19	1.14
381750--381782	15	2.2	15	89	10	50	0	18	3	78	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
387279--387354	22	3.4	23	74	17	79	63	2	14	19	1.42
390805--390859	21	2.6	21	91	0	83	25	14	34	25	1.94
395424--395490	19	3.6	19	73	18	52	73	1	1	23	1.00
395542--395799	37	7.0	37	83	5	319	42	9	3	44	1.54
396573--396638	30	2.2	31	81	8	82	57	7	4	30	1.47
396586--396854	30	9.1	30	71	9	140	57	8	11	22	1.61
396714--396795	29	2.8	29	83	0	101	54	8	13	23	1.66
396683--396825	59	2.5	56	84	8	180	57	7	12	22	1.60
399529--399565	18	2.1	18	94	0	65	29	29	5	35	1.80
399754--399813	3	20.3	3	77	16	63	65	1	1	31	1.13
400377--400432	28	2.0	29	85	3	78	41	5	19	33	1.74
401083--401130	21	2.2	21	85	10	62	31	0	43	25	1.55
406178--406225	21	2.2	21	85	10	62	31	0	43	25	1.55
410179--410285	50	2.1	50	91	0	169	39	11	16	32	1.84
410423--410466	21	2.1	21	86	0	61	52	0	6	40	1.28
410680--410895	105	2.1	105	98	0	414	46	4	11	37	1.60
410930--411234	164	1.9	165	84	2	416	43	10	15	31	1.79
416259--416297	19	2.0	21	90	10	64	74	0	5	20	1.01
420309--420362	22	2.4	23	81	9	67	20	12	1	64	1.36
424722--424765	23	2.0	23	81	4	54	52	9	2	36	1.46
440148--440184	12	3.1	12	88	0	56	32	0	18	48	1.49
440511--440555	18	2.5	18	96	0	81	57	0	11	31	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
442766--442805	21	1.9	21	85	10	55	35	12	30	22	1.91
442866--442918	20	2.5	20	84	6	61	26	13	28	32	1.93
443328--443561	45	5.2	45	88	1	281	40	9	18	31	1.83
457284--457461	61	2.9	61	86	0	221	28	24	16	29	1.97
457639--457680	22	1.9	22	85	0	57	50	9	4	35	1.56
458872--458923	27	1.9	27	88	0	77	36	23	13	26	1.92
464115--464145	15	2.1	15	93	0	53	58	6	0	35	1.24
464073--464239	74	2.3	73	82	4	185	43	7	11	37	1.68
466685--466723	19	2.1	19	95	0	69	33	28	15	23	1.95
466827--466923	21	4.7	21	78	7	108	40	22	15	21	1.91

Tables:   1   2   3   4   5   6   7   8