genome.fa.s7864.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007864.1 Hibiscus syriacus cultivar Beakdansim tig00110236_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1537186

Tables:   1   2   3   4   5   6   7   8   

This is table  3  of  8  ( 870 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
467492--467540	20	2.5	20	86	0	62	26	20	26	26	1.99
468963--469049	39	2.2	39	93	0	147	21	43	4	29	1.73
469515--469583	20	3.5	20	83	0	84	34	21	21	21	1.97
469655--469720	33	2.0	34	84	3	89	13	19	19	46	1.83
469712--469780	20	3.5	20	88	4	95	18	21	26	33	1.97
470285--470377	42	2.2	42	82	3	107	23	38	13	23	1.91
471580--471641	14	4.3	14	79	6	70	37	0	16	46	1.47
471582--471636	29	1.9	28	85	3	74	34	0	18	47	1.49
471594--471729	63	2.1	65	94	2	240	28	3	15	52	1.60
471803--471840	20	1.9	20	88	0	58	42	28	15	13	1.85
471830--472029	54	3.6	54	80	9	215	26	19	21	33	1.97
471879--472029	20	7.8	20	81	8	161	26	19	21	32	1.97
471920--472023	34	2.8	38	84	10	135	24	16	24	35	1.95
474258--474284	14	1.9	14	100	0	54	7	18	29	44	1.77
474485--474538	24	2.2	24	93	0	90	40	20	18	20	1.91
475359--475468	41	2.7	41	94	0	184	20	17	27	34	1.95
475359--475488	20	6.4	20	79	10	129	22	17	26	33	1.96
475374--475489	61	1.9	62	91	5	191	21	17	25	35	1.95
477371--477489	46	2.6	46	78	10	118	31	19	7	42	1.79
481500--481595	6	15.3	6	70	15	52	3	18	3	75	1.08
481497--481595	16	6.1	15	73	16	74	3	18	3	75	1.06
481498--481584	33	2.6	33	83	10	97	3	17	3	75	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
481508--481563	21	2.6	22	83	16	73	3	19	3	73	1.13
481532--481594	15	3.9	15	76	13	54	3	17	3	76	1.05
481498--481592	34	2.8	32	80	13	86	3	17	3	75	1.06
486931--486973	18	2.4	17	81	14	50	48	4	2	44	1.36
488282--488315	18	1.9	18	94	5	61	70	0	11	17	1.16
490477--490751	116	2.4	118	77	7	267	26	21	16	36	1.94
492441--492523	17	5.2	15	71	22	62	3	24	0	72	1.01
496203--496247	2	22.5	2	95	0	81	51	0	0	48	1.00
497459--497498	6	6.7	6	85	0	53	47	5	32	15	1.66
503223--503274	25	2.0	26	82	14	63	28	23	1	46	1.63
507215--507249	18	1.9	18	100	0	70	28	31	22	17	1.96
508043--508100	20	2.7	20	81	10	62	29	20	17	32	1.95
510929--511067	54	2.6	54	87	1	188	40	12	18	28	1.88
510929--511089	54	3.0	53	83	2	187	39	13	20	26	1.90
513539--513574	16	2.2	16	100	0	72	36	13	22	27	1.92
515569--515628	21	3.0	20	70	20	63	25	15	1	58	1.46
515823--515860	16	2.3	16	95	4	67	36	15	0	47	1.46
520290--520317	6	4.7	6	100	0	56	85	0	0	14	0.59
525705--525786	23	3.6	22	78	8	94	25	23	26	24	2.00
525709--525805	44	2.2	44	83	10	119	26	20	25	26	1.99
526135--526175	21	1.9	22	85	5	57	41	12	14	31	1.83
526600--526657	24	2.4	24	97	2	107	34	17	12	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
531564--531723	65	2.5	64	85	3	205	29	16	23	31	1.96
531564--531771	65	3.2	63	80	11	160	26	16	24	32	1.96
532027--532307	34	8.7	33	79	10	280	45	8	2	43	1.48
532094--532307	66	3.2	65	85	7	272	44	8	2	43	1.49
532020--532307	100	3.0	100	86	7	357	45	9	2	42	1.50
535709--535785	35	2.2	35	83	0	100	40	0	15	44	1.47
538700--538782	31	2.7	30	84	3	103	43	8	18	30	1.79
538700--538794	30	3.1	30	83	7	86	43	7	16	32	1.76
542720--543056	4	84.2	4	100	0	674	24	0	24	50	1.50
543416--543445	2	15.0	2	92	0	51	46	0	0	53	1.00
547661--547699	20	2.0	20	85	10	53	15	5	12	66	1.41
548121--548422	162	1.9	163	83	4	405	43	9	12	34	1.75
548280--548632	187	1.9	187	85	2	494	43	11	13	32	1.79
558755--558779	5	5.0	5	100	0	50	20	0	0	80	0.72
559632--559711	29	2.8	29	100	0	160	22	7	13	56	1.62
561188--561391	61	3.3	61	81	3	221	30	24	15	29	1.95
561537--561581	22	2.0	22	91	0	72	51	11	2	35	1.50
567045--567077	16	2.0	17	88	5	50	42	12	24	21	1.86
570266--570346	23	3.8	22	84	9	96	23	32	25	18	1.97
570266--570327	23	2.7	23	92	2	99	22	32	25	19	1.97
573920--573946	2	13.5	2	100	0	54	48	0	0	51	1.00
575486--575515	15	2.0	15	93	0	51	56	6	0	36	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
575377--575580	70	2.9	69	77	11	205	45	6	13	34	1.70
575373--575598	73	3.2	70	72	17	196	45	7	12	34	1.70
576522--576637	49	2.4	49	92	2	189	34	19	6	39	1.77
576788--577040	68	3.8	68	88	1	357	29	23	15	30	1.96
577258--577442	58	3.2	56	89	5	266	34	20	12	32	1.90
585207--585245	21	1.9	20	84	5	51	35	15	12	35	1.86
597814--597838	9	2.8	9	100	0	50	88	0	0	12	0.53
597814--597856	20	2.2	19	84	12	52	81	2	4	11	0.93
599399--599466	21	3.2	21	83	4	84	32	25	7	35	1.83
599751--599789	17	2.3	17	86	8	53	64	7	17	10	1.48
611030--611082	15	3.5	15	94	0	97	30	16	28	24	1.97
611059--611510	71	6.3	70	82	7	446	36	10	23	29	1.88
611228--611260	16	2.1	16	88	5	50	45	12	21	21	1.84
611059--611439	144	2.7	140	83	6	462	37	10	23	28	1.88
611081--611509	144	3.0	145	82	7	443	37	10	22	29	1.87
611124--611569	71	6.1	74	81	6	240	36	10	22	30	1.88
612913--612961	23	2.1	23	85	7	64	57	12	2	28	1.46
616184--616228	20	2.2	20	84	0	54	62	2	22	13	1.42
620569--620608	21	1.9	21	85	10	55	25	17	22	35	1.95
622332--622364	17	2.0	17	88	5	50	21	0	30	48	1.50
633465--633514	20	2.6	19	84	9	57	30	14	4	52	1.59
639778--639832	5	10.4	5	81	11	65	16	5	1	76	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
639778--639852	38	1.9	38	84	7	98	17	9	1	72	1.18
640915--640943	14	2.0	15	93	6	51	17	0	0	82	0.66
650307--650345	7	5.4	7	87	6	60	84	0	15	0	0.62
650382--650431	15	3.3	15	78	13	50	84	4	12	0	0.76
651541--651807	110	2.5	108	83	7	348	33	25	18	23	1.97
665185--665232	16	2.8	18	81	9	64	29	29	4	37	1.76
665925--665981	22	2.6	22	97	0	105	40	17	8	33	1.81
666344--666387	18	2.3	20	81	18	58	27	22	18	31	1.97
673611--673671	24	2.5	24	86	0	77	9	9	19	60	1.56
673632--673678	24	2.0	24	95	0	85	8	12	25	53	1.67
673759--673795	18	2.1	18	90	5	58	51	10	0	37	1.37
677129--677238	55	2.0	55	89	0	166	40	10	17	30	1.84
680792--681277	5	97.0	5	89	9	721	59	0	0	40	0.99
682255--682393	35	3.9	35	75	14	142	32	21	17	28	1.96
682251--682392	71	2.0	71	90	2	223	30	22	18	28	1.97
684049--684091	22	2.0	22	95	0	77	34	23	25	16	1.95
688555--688604	16	3.1	16	72	11	57	32	4	2	62	1.25
688556--688634	27	2.7	30	80	15	101	30	6	3	59	1.40
688633--688686	26	2.1	26	82	6	65	24	0	3	72	1.01
688642--688699	21	3.0	20	75	20	61	24	0	3	72	1.00
692406--692443	15	2.4	16	86	4	51	78	2	10	7	1.04
692387--692443	16	3.5	15	78	9	51	75	3	12	8	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
693081--693140	28	2.1	28	87	0	84	38	31	5	25	1.77
694432--694560	41	3.1	40	76	9	125	26	18	24	31	1.98
694706--694818	42	2.7	41	77	11	122	25	21	21	31	1.98
694292--695208	277	3.3	275	88	2	1292	29	14	20	36	1.92
695980--696306	136	2.5	128	79	7	327	34	16	22	26	1.95
696234--696846	91	6.7	90	89	2	857	38	15	22	23	1.92
696235--696846	274	2.2	275	91	0	958	38	16	22	23	1.92
697005--697113	44	2.6	41	82	7	121	33	22	19	24	1.97
698650--698718	32	2.2	32	80	10	81	30	11	2	55	1.50
698670--698716	16	2.9	16	78	9	60	34	4	2	59	1.29

Tables:   1   2   3   4   5   6   7   8