genome.fa.s7864.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007864.1 Hibiscus syriacus cultivar Beakdansim tig00110236_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1537186

Tables:   1   2   3   4   5   6   7   8   

This is table  5  of  8  ( 870 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
867502--867567	20	3.3	20	70	8	71	39	24	21	15	1.91
867613--867680	19	3.6	19	88	7	111	14	22	14	48	1.80
869266--869359	42	2.2	42	84	1	125	21	14	42	21	1.88
869695--869767	20	3.7	20	90	0	74	34	27	16	21	1.95
869701--869786	40	2.2	40	85	4	111	34	26	20	17	1.95
869721--869796	20	3.8	20	91	1	118	35	23	25	15	1.94
869724--869807	40	2.1	40	84	2	107	39	23	22	14	1.91
869833--869929	19	5.6	19	71	22	88	12	18	21	47	1.81
869855--869913	14	3.9	14	76	20	64	10	16	23	49	1.77
869838--869929	33	2.8	33	96	0	166	11	17	21	48	1.79
869923--869968	20	2.3	20	88	0	65	15	21	26	36	1.93
870509--870556	18	2.7	18	93	0	87	14	12	45	27	1.81
871876--871918	20	2.2	20	95	0	77	53	18	18	9	1.70
872408--872545	41	3.4	41	78	2	161	23	15	25	35	1.94
872428--872541	20	5.7	20	78	6	104	23	16	27	32	1.96
872475--872563	41	2.2	41	83	4	108	20	20	24	34	1.96
872536--872603	21	3.3	21	91	2	102	22	22	16	39	1.92
872593--872645	21	2.5	20	85	8	79	33	16	26	22	1.96
879775--880077	102	3.0	102	79	7	341	38	13	15	32	1.86
880021--880209	66	2.9	64	81	3	234	39	14	17	29	1.89
883131--883182	19	2.8	18	76	23	54	75	1	3	19	1.06
883177--883232	9	5.7	10	76	17	55	69	0	10	19	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
883159--883256	40	2.5	38	79	14	101	73	0	8	18	1.07
883351--883377	9	3.0	9	100	0	54	66	0	0	33	0.92
883438--883675	3	77.7	3	77	13	145	62	1	4	31	1.24
883388--883629	70	3.4	70	84	10	292	60	2	5	31	1.32
883682--883728	7	6.4	7	77	18	51	80	0	4	14	0.85
883680--883728	18	2.6	19	78	15	57	79	0	4	16	0.88
883688--883726	12	3.3	12	82	7	53	79	0	5	15	0.90
886193--886232	21	1.9	21	90	10	64	55	5	7	32	1.50
889227--889335	31	3.5	31	91	0	164	21	18	19	41	1.91
889249--889351	31	3.3	32	85	5	95	24	17	19	38	1.92
889228--889350	62	2.0	62	83	3	158	22	17	18	40	1.91
890033--890072	21	1.9	21	94	0	71	22	22	27	27	1.99
890931--891126	97	2.0	97	97	0	374	38	8	24	28	1.84
892717--892774	22	2.6	23	86	2	82	17	32	22	27	1.96
894251--894313	25	2.5	25	97	0	117	49	9	23	17	1.76
894853--894877	2	12.5	2	100	0	50	48	0	0	52	1.00
900734--900835	51	2.0	51	100	0	204	39	9	17	33	1.83
901594--901634	20	2.0	20	100	0	82	24	19	14	41	1.89
901713--901766	11	5.3	10	86	6	65	3	12	0	83	0.78
904706--904749	2	22.0	2	95	0	79	47	0	2	50	1.13
906238--906276	20	2.0	20	94	0	69	33	25	7	33	1.84
920310--920341	16	1.9	17	93	6	57	37	21	0	40	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
925391--925437	3	15.7	3	100	0	94	31	0	0	68	0.90
929817--929855	20	1.9	21	94	5	71	38	33	15	12	1.85
931073--931115	12	3.7	12	79	14	54	65	2	23	9	1.34
933294--933334	20	2.0	21	95	4	75	41	34	9	14	1.79
934018--934051	9	3.8	9	96	0	59	58	8	0	32	1.29
934704--934764	16	3.8	16	84	0	68	3	11	32	52	1.54
936853--936893	21	2.0	21	85	0	55	56	2	31	9	1.45
936881--936948	35	1.9	35	90	0	109	39	19	22	19	1.92
937485--937555	29	2.5	28	84	9	81	33	2	9	53	1.49
942142--942182	15	2.7	15	96	3	73	26	29	29	14	1.95
945664--945746	31	2.7	31	79	7	105	31	30	26	12	1.92
945698--945767	31	2.3	31	82	5	79	31	28	27	12	1.93
946619--946670	2	26.0	2	100	0	104	50	0	0	50	1.00
951908--952273	131	2.8	131	81	2	376	25	17	31	25	1.97
952367--952540	66	2.7	65	79	7	201	39	9	20	30	1.84
953923--953970	13	3.8	13	86	2	62	4	12	4	79	1.02
953923--953976	26	2.1	26	86	3	74	5	12	3	77	1.07
953935--953976	13	3.2	13	83	12	59	4	11	2	80	0.95
959571--959614	3	15.0	3	90	9	65	29	2	0	68	1.02
959569--959607	20	2.0	19	95	5	69	25	2	0	71	0.98
961194--961223	2	15.5	2	93	6	53	46	0	0	53	1.00
960941--961380	158	2.8	150	79	11	424	41	7	6	44	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
961356--961388	2	16.5	2	100	0	66	48	0	0	51	1.00
962772--962843	36	2.0	36	88	0	108	41	20	9	27	1.84
963296--963382	43	2.0	44	88	2	131	31	12	22	33	1.92
969280--969433	54	2.9	54	80	3	150	42	12	19	24	1.86
969793--969859	22	3.0	22	91	0	98	37	14	13	34	1.86
969800--969876	22	3.5	22	92	0	118	36	12	14	36	1.84
970544--971290	45	16.6	45	91	0	1170	23	23	18	33	1.97
971467--971527	3	20.0	3	87	12	81	32	1	0	65	1.02
975725--975759	17	2.0	18	88	5	54	34	0	17	48	1.47
976039--976119	42	1.9	42	82	7	101	27	23	20	28	1.99
976039--976247	111	1.9	112	82	6	264	31	24	22	22	1.99
976150--976360	42	5.1	40	81	8	242	31	18	24	26	1.97
976150--976372	85	2.6	85	85	5	283	30	19	24	25	1.98
981048--981228	41	4.4	41	82	4	222	33	19	20	26	1.96
981048--981228	82	2.2	82	86	3	249	33	19	20	26	1.96
981194--981355	59	2.5	68	82	13	198	30	20	19	29	1.97
981286--981351	31	2.1	31	100	0	132	30	22	18	28	1.97
983711--983877	54	3.1	54	93	1	282	32	22	20	25	1.98
985672--985776	29	3.6	29	84	6	140	39	7	13	40	1.73
989629--989655	3	9.0	3	100	0	54	33	0	0	66	0.92
992846--993150	159	1.9	159	93	0	522	57	12	11	19	1.65
992848--993150	81	3.8	81	92	4	499	57	11	11	19	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
994677--994731	20	2.8	20	77	0	56	32	16	14	36	1.89
996047--996205	87	1.8	87	81	5	196	28	15	20	36	1.92
1003838--1003911	24	3.1	24	79	16	91	39	5	1	54	1.32
1005855--1005920	32	2.1	32	91	0	105	43	10	12	33	1.76
1012902--1012957	18	2.9	18	73	14	58	33	28	16	21	1.95
1013021--1013070	20	2.5	20	83	6	66	38	14	20	28	1.91
1018093--1018134	20	2.2	19	86	4	57	35	21	11	30	1.90
1023777--1023819	20	2.2	20	86	0	59	34	23	11	30	1.90
1027246--1027288	20	2.3	19	88	8	61	34	18	20	25	1.96
1027254--1027302	20	2.4	21	86	6	73	30	14	26	28	1.95
1030475--1030577	22	4.5	22	72	7	98	38	0	9	51	1.35
1030430--1030532	15	6.5	15	78	15	109	44	0	2	51	1.23
1030512--1030728	54	4.1	54	92	5	358	33	0	13	52	1.40
1030589--1030728	22	5.7	22	70	19	91	32	0	15	52	1.42
1030460--1030728	108	2.6	108	86	12	359	35	0	11	52	1.38
1030488--1030759	54	5.4	48	89	8	304	33	0	13	52	1.41
1030611--1030979	80	4.7	78	74	14	310	33	0	14	52	1.41
1030673--1030746	22	3.2	22	71	14	76	27	0	18	54	1.44
1030739--1030912	54	3.2	54	94	0	296	35	0	12	52	1.39
1030512--1030947	236	1.8	236	97	0	827	33	0	13	52	1.41
1030825--1030867	22	2.0	22	100	0	86	34	0	13	51	1.42
1030739--1030947	108	2.0	102	88	7	312	34	0	12	52	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1030926--1030989	32	2.0	32	100	0	128	34	0	12	53	1.39
1046767--1046802	16	2.2	16	100	0	72	44	5	13	36	1.68
1058089--1058136	19	2.4	21	86	6	64	31	6	8	54	1.55
1060057--1060092	14	2.6	14	91	4	56	30	5	16	47	1.70
1063559--1063602	19	2.3	19	92	0	61	50	15	2	31	1.57
1063553--1063671	60	2.0	60	81	3	141	46	14	5	34	1.66
1063691--1063741	19	2.7	19	84	0	66	47	21	0	31	1.51
1063953--1064867	456	2.0	456	98	0	1776	35	13	14	36	1.86
1090067--1090093	13	2.1	13	100	0	54	55	0	0	44	0.99
1090067--1090109	13	3.1	14	86	6	52	55	0	2	41	1.12

Tables:   1   2   3   4   5   6   7   8