genome.fa.s7864.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007864.1 Hibiscus syriacus cultivar Beakdansim tig00110236_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1537186

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 870 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1472967--1473062	50	1.9	49	93	2	165	45	8	7	38	1.62
1472968--1473072	49	2.1	50	89	1	158	44	10	5	39	1.63
1481744--1481781	19	2.0	19	94	0	67	47	13	10	28	1.76
1482071--1482141	30	2.3	31	80	4	81	40	8	7	43	1.62
1482096--1482169	30	2.5	30	81	0	85	44	10	4	40	1.58
1482186--1482241	26	2.2	26	100	0	112	23	35	10	30	1.89
1489516--1489555	20	2.0	20	90	0	62	30	15	22	32	1.94
1495025--1495548	159	3.3	157	83	5	612	47	5	17	28	1.71
1497924--1497996	20	3.6	20	70	3	74	31	17	27	23	1.97
1497946--1498018	21	3.5	21	67	3	67	27	20	23	28	1.99
1497926--1498017	41	2.2	41	98	0	175	29	19	25	26	1.99
1498052--1498101	20	2.5	21	77	9	59	34	12	26	28	1.92
1501792--1501837	23	2.0	23	100	0	92	34	13	13	39	1.83
1502356--1502434	35	2.3	35	97	0	149	34	18	25	21	1.96
1505354--1505393	21	1.9	21	90	10	64	52	0	10	37	1.35
1507735--1507943	65	3.2	63	82	8	235	27	16	24	31	1.97
1507847--1507893	19	2.5	19	83	10	62	25	17	31	25	1.97
1516250--1516410	63	2.5	64	85	3	227	27	15	26	30	1.96
1516361--1516407	19	2.5	19	83	10	62	25	17	31	25	1.97
1517627--1517679	16	3.3	15	77	15	52	69	0	3	26	1.05
1517884--1517936	18	2.9	17	86	8	70	64	1	5	28	1.27
1518259--1518361	37	2.8	36	81	5	118	31	12	14	41	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1520297--1520358	23	2.9	21	85	7	81	20	35	25	17	1.95
1520299--1520384	21	4.1	20	74	14	66	22	34	26	16	1.95
1525236--1525320	40	2.1	40	88	0	125	29	14	23	32	1.94
1526595--1526707	27	4.0	27	78	14	104	51	1	8	38	1.44
1532435--1532540	51	2.1	52	98	1	205	27	5	24	42	1.77
1534539--1534582	20	2.1	21	87	4	63	31	27	25	15	1.96
1535387--1535542	31	5.0	31	88	1	224	21	20	21	36	1.95
1535389--1535542	62	2.5	62	91	4	249	21	20	21	36	1.95

Tables:   1   2   3   4   5   6   7   8

The End!