genome.fa.s7889.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007889.1 Hibiscus syriacus cultivar Beakdansim tig00110271_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1663484

Tables:   1   2   3   4   5   6   7   8   9   

This is table  1  of  9  ( 1005 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2953--3009	17	3.3	17	87	2	87	33	8	3	54	1.48
10597--10662	22	3.0	22	79	20	75	16	1	6	75	1.07
15841--15887	2	23.5	2	100	0	94	51	0	0	48	1.00
18107--18153	23	2.0	23	91	0	76	34	12	12	40	1.82
19592--19701	39	2.9	37	77	9	105	43	3	10	41	1.57
19725--19783	27	2.1	28	90	9	95	47	1	5	45	1.34
19699--19828	66	2.0	65	85	10	176	46	4	3	44	1.42
19811--19915	33	3.2	33	83	2	140	47	1	3	46	1.31
19983--20020	18	2.1	18	85	9	51	26	2	0	71	1.00
21271--21357	25	3.3	24	75	22	61	13	8	6	71	1.30
25455--26607	84	13.9	84	82	4	1192	30	24	19	24	1.98
25455--26570	329	3.4	330	85	3	1424	31	24	19	24	1.98
25455--26649	165	7.2	165	82	4	1327	31	24	20	24	1.98
27286--27381	43	2.3	42	83	11	119	41	3	7	47	1.47
27361--27393	2	16.5	2	100	0	66	51	0	0	48	1.00
27378--27514	38	3.6	37	83	13	179	45	4	4	45	1.43
27379--27541	77	2.1	77	83	12	210	47	4	3	44	1.40
27513--27607	32	2.9	32	81	12	113	46	3	5	45	1.41
27503--27607	33	3.2	33	81	8	115	45	2	4	46	1.39
27567--27651	45	1.9	44	83	7	109	43	2	8	45	1.46
29030--29058	12	2.3	13	94	5	51	37	3	0	58	1.15
30500--30597	41	2.4	42	84	6	148	37	12	12	37	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30556--30643	24	3.5	25	79	11	99	38	14	15	30	1.88
31434--31481	21	2.4	18	86	13	60	45	0	2	52	1.12
31965--32009	22	2.0	22	95	0	81	35	22	6	35	1.80
32544--32625	20	4.2	20	87	9	132	21	18	14	45	1.85
32544--32625	39	2.1	40	90	6	132	21	18	14	45	1.85
32753--32865	21	5.6	20	81	3	102	37	28	15	18	1.92
32752--32909	60	2.6	59	82	10	178	36	27	16	19	1.93
32817--32929	39	2.8	42	71	12	110	37	26	16	19	1.93
33095--33141	22	2.1	22	92	0	76	23	38	14	23	1.92
33526--33703	20	9.4	19	83	9	143	15	17	22	44	1.85
33526--33620	33	2.7	35	84	11	115	11	17	23	47	1.80
33558--33703	20	7.5	19	90	2	148	15	17	21	45	1.85
33558--33688	40	3.4	38	81	5	163	16	17	22	44	1.87
33667--33710	20	2.2	20	87	0	61	13	13	18	54	1.71
35681--35718	20	1.9	20	94	0	67	47	18	21	13	1.82
35714--35755	19	2.2	19	91	0	66	11	16	30	40	1.85
35723--35759	19	1.9	19	100	0	74	5	16	29	48	1.68
35781--35829	20	2.5	20	93	0	80	18	20	26	34	1.95
35797--35859	20	3.2	20	88	0	81	14	15	23	46	1.83
36335--36416	21	3.9	21	77	0	92	20	36	20	21	1.95
37930--38117	20	10.1	20	76	13	186	25	20	21	33	1.97
37953--38089	34	3.9	34	80	12	150	24	20	21	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37929--38035	54	2.0	53	85	1	142	23	21	21	33	1.97
37934--38117	74	2.5	74	88	4	266	25	20	21	33	1.97
38007--38109	54	1.9	54	100	0	206	25	19	22	33	1.97
40584--40637	24	2.2	24	93	0	90	40	20	18	20	1.91
40584--40651	24	2.8	24	84	0	64	38	20	17	23	1.93
41992--42085	10	9.8	9	72	13	62	17	24	27	30	1.97
41992--42030	21	1.9	21	89	5	62	17	25	23	33	1.96
41994--42091	19	5.1	19	76	14	69	15	26	27	30	1.96
41993--42091	29	3.4	28	86	5	117	16	26	27	30	1.96
42088--42145	5	10.8	5	75	14	53	18	50	22	8	1.74
42088--42152	22	3.0	22	95	0	121	18	47	23	10	1.79
42142--42172	7	4.4	7	100	0	62	16	29	29	25	1.96
43042--43165	63	2.0	63	82	6	153	18	28	27	25	1.98
43042--43118	31	2.5	31	78	2	82	15	27	29	27	1.96
49345--49443	10	10.3	9	77	12	81	16	27	27	29	1.97
49346--49443	19	5.1	19	78	14	78	15	27	27	29	1.96
49344--49443	29	3.4	30	83	9	118	17	27	27	29	1.97
49440--49504	22	3.0	22	93	0	112	18	46	23	12	1.82
50387--50510	63	2.0	63	82	6	153	17	27	28	26	1.98
51265--51332	20	3.4	20	95	0	127	23	19	29	27	1.98
51265--51352	40	2.2	40	91	4	142	22	19	27	30	1.98
51265--51352	20	4.4	20	89	2	124	22	19	27	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51281--51370	20	4.5	20	90	2	94	21	21	24	33	1.97
51287--51476	101	1.9	100	79	7	215	24	17	25	31	1.97
51427--51472	19	2.4	19	85	3	56	21	17	30	30	1.96
51438--51474	19	1.9	19	94	0	65	21	16	29	32	1.95
54329--54379	21	2.5	20	78	6	57	37	11	25	25	1.90
54957--55061	52	2.0	52	100	0	210	24	16	13	45	1.83
55302--55548	43	5.9	43	76	8	186	35	18	20	26	1.95
63767--63817	21	2.4	22	81	15	54	13	31	21	33	1.92
66260--66378	24	5.0	24	90	4	186	24	15	20	39	1.91
68514--68543	13	2.3	13	94	0	51	20	50	10	20	1.76
71007--71122	24	4.8	24	89	4	162	23	17	20	38	1.93
78894--79225	41	8.1	41	77	6	240	35	18	18	28	1.94
78892--79116	82	2.7	83	82	1	272	36	18	19	25	1.94
80060--80174	17	6.8	17	95	0	212	37	17	21	23	1.94
82099--82173	37	2.0	37	94	0	132	40	20	14	25	1.90
83106--83194	44	2.0	44	100	0	178	39	15	8	35	1.79
84841--84867	13	2.1	13	100	0	54	48	0	0	51	1.00
85511--85570	27	2.2	27	100	0	120	46	46	0	6	1.29
88720--88752	17	1.9	17	100	0	66	33	12	12	42	1.79
89390--89722	111	3.0	111	94	0	578	44	12	8	35	1.72
90000--90125	50	2.5	50	83	5	173	21	29	34	15	1.94
92416--92463	25	1.9	25	100	0	96	43	27	12	16	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93897--93957	23	2.7	23	92	0	104	27	26	27	18	1.98
94933--94970	20	2.0	20	89	5	60	31	10	7	50	1.66
94934--94979	20	2.2	20	84	7	56	36	13	6	43	1.69
95344--95381	20	1.9	20	88	0	58	23	23	21	31	1.98
99040--99084	17	2.5	17	85	7	54	64	0	0	35	0.94
99057--99134	30	2.7	30	84	4	88	53	2	1	42	1.22
99628--99661	11	3.4	10	88	11	52	64	0	0	35	0.94
99628--99673	20	2.2	21	84	3	58	63	0	2	34	1.07
99958--100011	5	11.4	5	90	4	60	3	0	14	81	0.82
104348--104466	31	3.8	32	88	2	170	26	20	21	31	1.98
105341--105402	23	2.7	23	87	2	99	32	27	24	16	1.96
106962--107024	20	2.9	20	77	15	63	23	26	19	30	1.98
106963--107031	24	3.0	23	80	14	72	24	26	17	31	1.97
108603--108707	24	4.4	24	75	7	81	25	19	23	31	1.98
110096--110254	73	2.2	73	80	2	176	32	13	11	42	1.80
110372--110410	20	1.9	21	89	5	62	23	20	12	43	1.86
111019--111074	28	2.0	29	89	3	87	71	3	3	21	1.17
111145--111207	29	2.1	30	82	8	76	52	4	3	39	1.38
112066--112119	21	2.6	20	76	5	54	22	3	5	68	1.26
116199--116285	42	2.0	44	84	4	115	51	2	4	41	1.35
121379--121437	23	2.6	23	88	0	91	40	6	18	33	1.77
123448--123506	24	2.5	24	78	13	70	50	8	0	40	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125312--125358	20	2.3	20	78	7	60	14	21	14	48	1.80
125288--125936	183	3.6	181	86	2	845	27	16	13	42	1.86
126271--126505	3	74.7	3	67	17	77	60	2	5	31	1.35
126262--126310	19	2.9	16	75	16	53	69	2	2	26	1.10
126331--126375	17	2.5	18	78	10	56	55	8	4	31	1.51
126360--126454	39	2.3	41	80	10	106	58	3	3	34	1.29
126420--126483	19	3.4	18	74	8	56	56	1	6	35	1.34
126260--126483	16	14.1	16	67	21	89	58	3	4	33	1.35
126624--126735	51	2.2	51	82	3	136	19	30	31	18	1.96
130430--130516	35	2.5	34	80	12	97	54	10	8	27	1.62

Tables:   1   2   3   4   5   6   7   8   9