genome.fa.s7889.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007889.1 Hibiscus syriacus cultivar Beakdansim tig00110271_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1663484

Tables:   1   2   3   4   5   6   7   8   9   

This is table  2  of  9  ( 1005 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
132806--132839	18	1.9	18	94	5	61	64	2	0	32	1.08
132901--132934	10	3.4	10	87	0	50	44	0	26	29	1.55
139086--139135	23	2.1	25	85	7	68	14	52	4	30	1.59
141589--141770	87	2.1	87	83	2	222	38	20	16	24	1.93
146959--147002	17	2.6	17	78	7	54	75	0	11	13	1.06
147282--147321	14	2.7	14	92	7	62	62	0	2	35	1.09
147266--147374	19	5.6	21	70	23	62	63	0	4	32	1.15
147768--147810	17	2.5	17	85	7	52	41	23	6	27	1.80
148684--148952	110	2.5	105	80	9	310	23	17	24	34	1.96
149649--149844	65	2.9	67	81	8	213	37	9	20	32	1.85
149797--149879	36	2.3	36	85	2	114	39	13	21	25	1.90
151286--151419	69	1.9	69	95	0	241	24	14	23	38	1.92
151491--151528	13	3.0	13	85	14	53	5	15	2	76	1.08
154720--154766	17	2.7	17	81	12	60	72	0	12	14	1.13
154862--154939	10	7.6	10	74	23	65	73	0	2	24	0.96
154792--154939	27	5.4	27	69	14	90	68	3	3	24	1.20
154922--154997	39	2.0	39	89	2	118	67	1	5	26	1.20
154937--154996	17	3.2	17	70	20	57	63	1	5	30	1.25
155032--155078	25	2.0	23	83	8	58	59	0	4	36	1.17
155164--155196	12	2.8	12	82	17	50	54	0	18	27	1.44
161589--161631	19	2.1	21	87	8	63	46	20	11	20	1.82
166538--166590	27	2.0	27	85	3	72	28	1	15	54	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
169496--169544	26	2.0	25	84	11	66	20	14	40	24	1.89
170763--170826	29	2.1	31	83	11	80	57	1	14	26	1.46
183834--183883	25	2.0	25	100	0	100	32	24	4	40	1.73
184334--184409	23	3.6	21	75	8	73	28	25	23	22	1.99
190046--190073	3	9.3	3	100	0	56	32	0	0	67	0.91
193035--193104	14	5.0	14	98	0	131	7	14	22	55	1.63
193380--193422	6	7.2	6	94	0	77	18	13	65	2	1.38
193544--193606	24	2.6	26	78	16	73	55	0	0	44	0.99
193562--193601	19	2.1	19	85	0	53	55	0	0	45	0.99
193624--193669	12	3.9	12	82	2	58	30	45	10	13	1.77
194657--194687	16	1.9	16	100	0	62	6	12	22	58	1.58
197589--197661	35	2.0	37	82	10	89	47	4	1	46	1.30
199428--199574	73	2.0	73	100	0	294	25	8	29	36	1.85
203659--203711	15	3.4	15	76	5	52	26	1	5	66	1.25
205581--205643	22	2.9	22	78	4	65	46	6	6	41	1.55
205689--205754	23	2.7	25	81	9	82	46	7	1	43	1.41
205722--205778	27	2.1	27	86	0	78	47	5	3	43	1.43
206912--206968	28	2.0	28	100	0	114	28	21	19	31	1.97
209950--210058	54	2.0	54	100	0	218	28	1	40	29	1.67
214250--214330	34	2.4	34	100	0	162	29	13	12	44	1.80
216086--216138	20	2.7	19	82	8	61	30	33	13	22	1.92
221752--221848	44	2.2	45	85	5	126	41	5	23	29	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
221952--222026	37	2.0	37	86	0	105	40	8	29	22	1.82
229201--229252	23	2.3	23	100	0	104	26	36	3	32	1.75
231172--231198	6	4.5	6	100	0	54	33	51	14	0	1.43
235688--235755	2	34.0	2	100	0	136	50	0	0	50	1.00
244416--244508	30	3.2	28	77	4	78	27	10	15	46	1.79
244832--244941	54	2.0	54	100	0	220	39	16	12	31	1.86
245656--245740	19	4.5	19	84	0	107	30	18	9	41	1.82
250738--250793	24	2.3	24	87	0	76	46	5	14	33	1.67
252058--252108	23	2.2	23	100	0	102	52	13	15	17	1.74
258819--258886	30	2.3	30	94	0	118	32	7	26	33	1.84
266079--266165	42	2.1	42	100	0	174	26	14	9	49	1.74
267011--267050	20	2.0	20	90	0	62	20	25	15	40	1.90
277445--277477	14	2.4	14	90	5	50	48	0	0	51	1.00
278878--278951	3	25.3	3	86	5	98	59	0	1	39	1.06
279358--279783	112	3.9	111	89	6	647	29	19	13	38	1.89
279282--279783	222	2.3	224	86	7	679	29	19	13	37	1.90
280564--280900	81	4.2	82	89	6	498	34	24	14	27	1.93
281653--281697	16	2.6	18	89	6	67	53	6	6	33	1.53
282026--282060	10	3.6	10	88	3	54	0	14	0	85	0.59
292526--292558	12	2.5	14	90	9	52	66	3	6	24	1.28
293460--293865	196	2.1	197	87	8	587	49	4	9	36	1.56
294492--294602	55	2.0	55	96	3	206	20	29	29	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
294714--294752	16	2.5	16	95	4	71	17	20	53	7	1.68
294860--294946	3	29.0	3	81	4	95	57	0	1	41	1.06
299210--299251	21	2.0	21	100	0	84	28	14	9	47	1.75
299240--299316	33	2.4	32	86	4	118	29	9	16	44	1.79
299906--299971	26	2.5	26	73	9	62	50	0	1	48	1.10
316783--316813	2	15.5	2	100	0	62	0	48	0	51	1.00
320749--320817	28	2.5	28	79	9	77	56	5	11	26	1.57
322254--322300	23	2.0	23	87	0	67	57	0	4	38	1.18
322849--323003	59	2.6	59	92	1	256	31	14	27	26	1.95
322652--323405	286	2.6	285	87	1	1028	31	16	23	28	1.96
323149--323292	59	2.4	59	90	1	216	31	11	28	29	1.91
323477--323697	53	4.1	53	77	9	198	41	17	8	32	1.80
323477--323674	106	1.8	110	84	4	278	40	17	9	32	1.82
323583--323743	58	2.9	53	80	9	164	43	17	6	32	1.75
334350--334420	22	3.2	22	79	0	70	42	15	19	22	1.89
335184--335502	32	10.1	32	90	3	472	34	19	18	27	1.95
335184--335502	95	3.4	96	89	4	472	34	19	18	27	1.95
335184--335502	127	2.5	126	89	5	477	34	19	18	27	1.95
336551--336616	20	3.0	22	79	14	66	27	27	21	24	1.99
336572--336616	22	2.0	23	86	4	65	26	28	22	22	1.99
336587--336649	33	1.9	33	93	0	108	28	30	19	22	1.98
336620--336662	22	2.0	22	95	0	77	25	30	20	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
339973--340018	5	9.2	5	81	9	58	0	21	2	76	0.90
339973--340026	21	2.7	21	88	8	78	0	24	1	74	0.92
345138--345219	43	1.9	42	82	2	101	40	15	12	31	1.85
348040--348073	12	2.8	12	86	4	50	76	0	0	23	0.79
348033--348073	21	2.0	21	85	9	57	73	2	0	24	0.96
348250--348346	28	3.5	28	89	0	140	32	14	10	42	1.79
348252--348381	56	2.3	56	84	2	154	30	14	10	44	1.78
348252--348374	28	4.4	28	87	0	138	32	13	9	43	1.77
356346--356374	12	2.5	12	94	5	51	41	13	17	27	1.87
356400--356446	20	2.3	20	88	0	67	44	10	4	40	1.59
359754--359791	20	1.9	20	88	0	58	39	13	0	47	1.42
367559--367594	18	1.9	19	88	5	56	72	5	22	0	1.05
368132--368183	13	4.0	13	84	0	68	25	23	15	36	1.93
368132--368183	26	2.0	26	92	0	86	25	23	15	36	1.93
368155--368368	85	2.5	85	87	4	290	29	19	17	34	1.94
368155--368405	85	3.0	84	80	6	247	30	19	17	32	1.95
370008--370032	12	2.1	12	100	0	50	68	8	8	16	1.38
373443--373494	18	2.9	18	100	0	104	46	3	17	32	1.66
374508--374563	15	3.7	15	92	2	85	8	19	12	58	1.60
377095--377139	20	2.2	21	96	4	83	28	11	0	60	1.31
379221--379256	18	2.0	18	88	0	54	52	0	2	44	1.15
387136--387257	41	3.0	42	77	6	106	25	22	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
386673--387494	230	3.6	231	83	5	1018	32	17	17	32	1.94
388031--388063	3	11.0	3	100	0	66	33	0	0	66	0.92
390993--391140	17	8.5	17	69	10	84	39	10	8	41	1.68
390998--391149	35	4.4	35	77	5	132	40	10	7	42	1.67
391090--391167	34	2.3	35	82	6	88	41	10	8	39	1.71
395803--395857	28	2.0	28	83	16	71	30	3	10	54	1.52
396901--397014	36	3.2	36	77	13	105	35	7	12	44	1.71
402764--403249	60	8.1	60	92	0	785	36	14	22	27	1.92
409733--409812	31	2.5	31	79	2	88	16	27	28	27	1.97
412211--412278	21	3.3	21	64	12	59	19	27	13	39	1.89

Tables:   1   2   3   4   5   6   7   8   9