Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007889.1 Hibiscus syriacus cultivar Beakdansim tig00110271_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1663484

Tables:   1   2   3   4   5   6   7   8   9   

This is table  9  of  9  ( 1005 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1594343--1594373
2
15.5
2
100
0
62
51
0
0
48
1.00
1596345--1596405
22
2.9
22
80
7
65
29
14
21
34
1.93
1596830--1597286
45
10.2
45
94
1
774
39
11
19
29
1.86
1596830--1597286
134
3.4
135
94
1
783
39
11
19
29
1.86
1596830--1597286
179
2.5
180
93
1
783
39
11
19
29
1.86
1599208--1599266
17
3.5
17
68
13
50
28
15
8
47
1.74
1606779--1606830
20
2.6
20
85
8
79
32
15
32
19
1.93
1606854--1606912
19
2.9
19
79
13
73
32
13
20
33
1.91
1606854--1606914
22
2.9
22
85
7
83
31
13
22
32
1.92
1610841--1610908
34
2.0
33
91
2
109
42
14
22
20
1.88
1617665--1617730
7
9.4
7
100
0
132
43
0
15
40
1.46
1618587--1618655
30
2.2
30
82
15
86
34
5
15
43
1.71
1618596--1618655
29
2.0
30
90
6
95
33
6
15
45
1.72
1618940--1618979
20
1.9
21
85
10
55
37
37
10
15
1.80
1620119--1620166
19
2.5
20
82
3
62
52
6
12
29
1.63
1621428--1621496
30
2.2
30
85
15
95
34
5
17
42
1.73
1621437--1621496
30
2.0
30
93
6
104
33
6
16
43
1.74
1621576--1621633
21
2.8
21
94
0
107
20
39
18
20
1.92
1621839--1621878
20
1.9
22
90
10
66
37
40
10
12
1.77
1625143--1625228
3
28.7
3
76
4
66
38
3
0
58
1.15
1625145--1625207
29
2.1
30
88
2
92
41
0
0
58
0.98
1626395--1626438
2
22.0
2
95
0
79
47
2
0
50
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1631798--1631936
54
2.8
47
82
8
145
34
15
23
25
1.95
1631839--1631951
54
2.1
54
91
0
181
38
15
18
28
1.91
1633001--1633909
219
4.2
218
90
1
1322
30
16
20
31
1.95
1634329--1634411
3
28.3
3
80
9
82
34
0
0
65
0.93
1634330--1634412
20
4.1
20
86
6
105
36
0
0
63
0.94
1637005--1637369
54
6.8
54
86
1
446
32
18
16
32
1.93
1637005--1637369
162
2.3
160
88
2
534
32
18
16
32
1.93
1637678--1637765
46
1.9
46
95
0
158
45
10
20
23
1.82
1641617--1641658
22
1.9
22
95
0
75
28
14
26
30
1.95
1642086--1642577
45
11.0
45
90
0
761
39
10
19
30
1.86
1648465--1648514
20
2.5
21
83
9
68
30
16
32
22
1.95
1649022--1649164
45
3.2
45
91
1
234
39
12
19
27
1.88
1649099--1649224
59
2.1
60
91
4
211
38
10
19
32
1.85
1649162--1649512
45
7.8
45
93
0
560
39
11
18
31
1.85
1649070--1649269
104
1.9
105
94
1
357
38
11
20
30
1.87
1651451--1651521
22
3.3
22
69
15
58
36
11
23
28
1.89
1651954--1652036
27
3.1
27
64
25
66
28
21
19
30
1.98
1652089--1652174
27
3.2
27
64
18
70
30
20
17
31
1.96
1651881--1652447
54
10.5
54
86
3
757
32
19
16
31
1.94
1656624--1656665
10
4.2
10
85
8
50
73
2
0
23
0.94
1658090--1658155
16
4.3
15
94
3
89
6
12
0
81
0.85
1658097--1658155
16
3.7
16
90
4
93
6
11
0
81
0.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1658111--1658155
9
5.4
9
77
20
53
8
11
0
80
0.92

Tables:   1   2   3   4   5   6   7   8   9

The End!