genome.fa.s7889.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007889.1 Hibiscus syriacus cultivar Beakdansim tig00110271_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1663484

Tables:   1   2   3   4   5   6   7   8   9   

This is table  4  of  9  ( 1005 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
600129--600163	6	6.2	6	93	6	56	37	45	0	17	1.48
602996--603035	21	1.9	21	84	0	53	22	0	25	52	1.47
603002--603078	28	2.8	29	78	11	81	22	0	31	46	1.52
603004--603078	7	10.9	7	73	2	53	21	0	30	48	1.51
610888--610953	33	2.0	33	96	0	123	36	12	4	46	1.61
616256--616281	9	2.9	9	100	0	52	23	0	0	76	0.78
616788--616846	24	2.4	25	86	5	77	20	5	5	69	1.27
623834--623881	21	2.2	22	85	3	62	50	4	0	45	1.21
623845--623916	23	3.0	23	82	13	83	51	2	0	45	1.15
623843--623944	52	1.9	53	84	11	138	50	1	0	48	1.12
623845--623968	52	2.5	51	79	15	122	49	1	0	49	1.10
623993--624061	19	3.6	18	71	21	52	49	1	1	47	1.19
623956--624041	27	3.1	27	71	18	70	47	1	2	48	1.22
624083--624160	16	4.7	15	70	20	50	48	1	0	50	1.09
624230--624270	14	2.9	14	88	0	64	56	0	0	43	0.99
624441--624474	14	2.4	14	90	0	50	41	11	8	38	1.73
632173--632226	20	2.7	20	85	2	72	33	20	12	33	1.91
632827--632864	20	1.9	20	100	0	76	47	21	15	15	1.82
632881--632946	34	1.9	34	87	0	96	16	15	21	46	1.83
634438--634548	42	2.6	42	85	0	141	25	39	13	21	1.90
634648--634859	21	10.1	21	70	9	137	19	12	33	33	1.90
634678--634851	63	2.8	63	76	1	152	18	12	33	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
634969--635030	4	15.5	4	86	0	88	25	1	3	69	1.13
635179--635233	21	2.6	21	88	0	74	21	36	16	25	1.94
639336--639387	24	2.2	23	83	6	68	42	15	19	23	1.89
639512--639545	12	2.8	12	90	0	50	14	0	29	55	1.40
640447--640599	41	3.7	40	77	10	139	29	16	23	30	1.96
640387--640606	20	10.8	20	70	16	105	32	15	23	29	1.95
640419--640586	62	2.7	61	76	9	171	32	15	22	30	1.95
640306--640640	40	8.3	39	73	15	182	32	13	23	30	1.93
640418--640640	20	10.9	21	73	14	110	29	14	24	31	1.94
641565--641618	21	2.5	22	88	8	85	37	14	16	31	1.89
644156--644750	3	198.7	3	85	7	782	63	0	35	0	0.97
647433--647484	18	2.9	16	78	16	50	69	3	5	21	1.26
650841--650907	17	3.9	17	70	16	50	50	1	1	46	1.19
660797--660833	19	1.9	19	88	0	56	32	24	5	37	1.78
661476--661550	31	2.4	31	97	0	141	25	2	18	53	1.58
667405--667524	53	2.2	53	86	1	159	32	28	18	20	1.96
667511--667547	20	1.9	19	89	10	58	24	32	21	21	1.98
667715--667750	19	1.9	19	94	5	65	25	30	22	22	1.99
667383--667799	203	2.1	202	96	2	777	31	25	18	24	1.98
667383--667821	202	2.2	201	94	3	776	31	25	18	24	1.98
673440--673497	23	2.7	21	79	10	71	27	27	12	32	1.92
673440--673516	23	3.7	20	79	8	66	28	27	14	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
673439--673520	21	3.8	22	73	9	62	28	26	14	30	1.95
673884--673930	25	2.0	24	84	12	62	31	2	6	59	1.34
679555--679611	28	2.0	28	100	0	114	38	36	7	17	1.77
691044--691081	20	2.0	20	90	10	62	15	10	23	50	1.75
692566--692876	52	6.0	54	82	7	369	31	21	18	28	1.97
692567--692879	105	3.0	106	82	7	376	31	21	18	28	1.97
692584--692876	157	1.9	156	85	6	414	31	20	18	29	1.97
699198--699550	54	6.6	54	87	0	456	32	19	17	30	1.95
699198--699548	161	2.2	161	84	1	452	32	19	17	30	1.95
699875--699926	22	2.5	20	79	11	59	25	30	13	30	1.94
700082--700138	21	2.8	21	78	7	64	33	15	17	33	1.92
701109--701287	64	2.8	62	77	18	188	28	16	24	30	1.97
701129--701287	65	2.5	65	84	8	202	28	16	23	31	1.96
701838--701862	13	1.9	13	100	0	50	44	16	0	40	1.47
702364--702407	21	2.1	21	82	0	52	36	15	38	9	1.80
709248--709337	44	2.0	44	97	0	171	34	22	7	35	1.83
709771--709825	19	2.8	19	81	13	67	27	23	27	21	1.99
709812--710015	65	3.2	62	79	12	216	27	17	23	30	1.97
710741--710961	53	4.1	53	86	4	311	32	19	19	28	1.96
711753--712046	55	5.3	55	86	1	374	29	20	20	29	1.98
712492--712527	18	2.0	18	100	0	72	38	11	16	33	1.84
716611--716659	16	3.1	16	80	13	66	44	6	12	36	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
716752--716817	23	2.9	23	75	8	71	15	22	25	36	1.93
716806--716846	21	1.9	21	85	5	55	19	7	24	48	1.74
728797--728881	31	2.8	31	81	1	100	31	29	24	14	1.94
730407--730441	13	2.7	13	95	0	61	8	22	60	8	1.54
730397--730444	18	2.7	18	87	9	71	8	22	56	12	1.63
733393--733893	250	2.0	250	99	0	984	18	14	32	33	1.91
736046--736085	21	1.9	21	84	0	53	40	15	2	42	1.60
739067--739213	73	2.0	74	98	1	287	35	16	16	31	1.91
740331--740369	20	2.0	20	84	0	51	74	2	2	20	1.06
740863--740902	18	2.2	18	90	0	62	25	20	32	22	1.98
742787--742905	50	2.4	49	72	10	114	26	25	31	17	1.97
744842--744921	32	2.5	32	91	2	126	23	5	15	56	1.59
753016--753135	21	5.6	21	80	12	127	20	20	23	35	1.96
753016--753151	46	3.1	45	79	12	174	22	19	22	36	1.95
755631--755664	17	2.1	16	88	5	50	14	8	0	76	1.01
758921--758966	20	2.3	19	85	14	58	50	8	15	26	1.73
768655--768700	20	2.3	19	85	14	58	50	8	15	26	1.73
781868--781939	36	2.0	36	91	0	117	40	19	18	22	1.92
781989--782034	22	2.1	22	88	8	67	26	13	45	15	1.82
782013--782409	55	7.2	55	80	2	386	32	19	25	22	1.97
782033--782429	165	2.4	164	82	4	440	32	19	24	23	1.98
796034--796065	3	11.0	3	93	6	57	65	0	34	0	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
800331--800410	22	3.7	22	86	5	110	23	20	28	27	1.99
805820--805845	13	2.0	13	100	0	52	38	15	7	38	1.76
807272--807308	2	18.5	2	100	0	74	48	0	0	51	1.00
808759--808798	20	2.0	20	100	0	80	30	15	15	40	1.87
816178--816510	164	2.1	159	87	2	477	40	15	15	28	1.88
823448--823500	21	2.5	21	77	17	56	41	30	13	15	1.85
823780--823823	2	21.0	2	90	9	70	47	4	0	47	1.22
828018--828101	26	3.2	26	96	0	150	27	19	29	23	1.98
840394--840432	17	2.3	17	86	8	53	33	7	10	48	1.66
842061--842103	22	1.9	23	90	4	70	60	0	2	37	1.10
843246--843274	2	14.5	2	100	0	58	48	0	0	51	1.00
846128--846232	51	2.1	51	82	7	124	17	30	31	20	1.96
852873--852926	28	2.0	27	89	10	83	48	5	9	37	1.59
854644--854686	21	2.0	22	86	4	61	81	4	0	13	0.84
859586--859631	18	2.5	19	89	7	76	67	0	15	17	1.24
861789--861816	12	2.3	12	100	0	56	50	42	7	0	1.30
862094--862135	18	2.4	18	80	4	50	52	35	7	4	1.50
866057--866112	20	2.8	19	76	17	51	19	14	10	55	1.68
866078--866124	20	2.3	20	85	0	58	19	19	10	51	1.75
868380--868500	54	2.2	54	83	2	154	26	9	21	42	1.82
868800--868882	42	2.0	42	85	4	114	21	26	24	27	1.99
869208--869912	136	5.2	136	84	2	833	35	16	20	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
869208--869912	271	2.6	272	85	1	867	35	16	20	27	1.94
874997--875182	93	2.0	96	85	8	256	37	11	9	41	1.75
876763--876827	32	2.0	32	96	0	121	38	6	1	53	1.35
876864--876894	14	2.2	14	94	0	53	35	0	0	64	0.94
876856--876896	14	2.6	16	77	18	50	36	0	0	63	0.95
880897--880930	18	1.9	18	88	5	52	67	2	0	29	1.05
880893--880938	17	2.6	18	82	3	58	63	4	0	32	1.14
881003--881031	2	15.0	2	92	7	51	48	0	0	51	1.00
882480--882561	3	27.0	3	87	2	110	37	0	1	60	1.04
883980--884084	53	2.0	53	81	9	124	27	4	3	63	1.32

Tables:   1   2   3   4   5   6   7   8   9