genome.fa.s7915.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007915.1 Hibiscus syriacus cultivar Beakdansim tig00110318_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1667290

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  10  of  10  ( 1148 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1595290--1595339	21	2.4	21	93	0	82	68	8	6	18	1.36
1596559--1596634	29	2.6	29	86	10	102	22	34	27	15	1.95
1597318--1597361	21	2.1	21	91	0	70	29	0	15	54	1.42
1597338--1597391	28	1.9	28	96	0	99	29	0	12	57	1.36
1600458--1600535	10	7.8	10	71	21	56	41	0	15	43	1.46
1600485--1600596	21	5.5	20	68	18	61	41	0	12	45	1.42
1600455--1601331	60	15.2	60	84	9	1163	40	0	12	46	1.41
1600455--1601331	119	7.6	120	81	11	1052	40	0	12	46	1.41
1600641--1600743	35	3.2	35	64	25	100	40	0	10	48	1.38
1600455--1601331	168	5.1	175	89	7	1217	40	0	12	46	1.41
1600845--1600871	10	2.7	10	100	0	54	40	0	18	40	1.51
1600953--1601033	24	3.3	24	65	3	72	39	0	14	45	1.45
1601013--1601039	10	2.7	10	100	0	54	40	0	18	40	1.51
1601051--1601204	21	7.6	20	67	17	63	40	0	11	48	1.38
1601252--1601278	10	2.7	10	100	0	54	40	0	18	40	1.51
1601278--1601347	25	3.1	22	79	16	63	38	0	11	50	1.39
1601299--1601346	14	3.6	14	81	16	66	35	0	16	47	1.47
1601299--1601347	25	2.0	25	95	0	89	36	0	16	46	1.47
1603566--1603598	8	4.1	8	96	0	57	60	15	0	24	1.35
1603901--1603941	22	1.9	21	85	5	55	53	19	0	26	1.45
1604040--1604086	14	3.5	13	77	11	51	0	40	2	57	1.11
1604081--1604144	26	2.4	28	84	12	89	6	34	7	51	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1604392--1604474	29	2.9	29	81	0	94	18	22	34	24	1.96
1614003--1614042	18	2.3	18	87	8	57	72	10	10	7	1.28
1616966--1617012	21	2.2	21	77	7	51	44	0	2	53	1.12
1617235--1617271	2	18.5	2	100	0	74	51	0	0	48	1.00
1618280--1618310	12	2.6	12	94	0	53	51	0	6	41	1.27
1618775--1618830	26	2.1	26	80	9	60	53	21	8	16	1.69
1625927--1625956	16	1.9	16	93	6	53	13	6	6	73	1.24
1631371--1631531	82	1.9	84	81	7	195	36	13	18	31	1.89
1632458--1632537	30	2.8	30	90	7	123	23	48	15	12	1.78
1632524--1632591	33	2.2	30	80	14	77	26	38	19	16	1.92
1632782--1632817	11	3.2	11	84	7	54	22	22	19	36	1.95
1632987--1633024	9	4.2	9	83	10	51	31	0	2	65	1.06
1633017--1633117	38	2.5	41	81	12	120	34	0	15	48	1.52
1633095--1633147	28	1.9	27	88	3	79	32	1	16	49	1.57
1633094--1633158	27	2.3	29	82	10	82	36	1	15	46	1.55
1633348--1633387	21	1.9	21	100	0	80	27	0	15	57	1.38
1633559--1633632	30	2.4	30	78	14	80	39	1	9	50	1.44
1634886--1634936	22	2.3	21	76	6	57	39	1	1	56	1.22
1635932--1636021	14	6.6	14	74	16	82	47	14	0	37	1.44
1635931--1635979	25	2.0	25	95	0	89	46	16	0	36	1.47
1635951--1636178	60	4.4	48	72	27	164	46	12	0	40	1.45
1635994--1636361	60	6.2	60	90	5	588	45	13	0	40	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1635994--1636366	179	2.1	178	93	3	635	45	13	0	40	1.46
1635994--1636361	119	3.1	120	91	4	588	45	13	0	40	1.46
1639424--1639477	28	1.9	28	92	0	90	55	12	0	31	1.38
1639420--1639484	28	2.3	28	82	10	87	53	10	0	35	1.36
1639454--1639502	21	2.3	21	85	3	71	53	16	0	30	1.43
1640145--1640193	20	2.5	20	100	0	98	8	16	51	24	1.71
1640165--1640241	30	2.6	30	95	0	136	10	16	49	23	1.77
1640203--1640301	49	2.0	49	96	0	180	12	16	47	24	1.80
1640297--1640383	29	3.0	29	86	0	120	17	29	36	16	1.91
1648730--1648772	2	21.5	2	100	0	86	48	0	0	51	1.00
1652083--1652151	27	2.6	27	97	0	129	44	13	0	42	1.43
1652879--1653425	199	2.7	200	79	10	564	43	12	12	31	1.79
1653398--1653535	73	1.9	72	82	5	172	44	10	15	28	1.80
1653548--1653963	99	4.2	100	83	6	474	32	10	12	44	1.76
1654092--1654143	21	2.5	21	100	0	104	55	9	15	19	1.67
1654217--1654391	68	2.5	69	76	9	176	29	10	10	49	1.71
1655456--1655495	15	2.7	15	96	0	71	25	27	10	37	1.88
1659206--1659280	19	3.6	21	83	10	91	34	29	17	18	1.94
1662628--1662668	7	5.9	7	88	11	66	87	0	12	0	0.53
1662628--1662667	13	2.9	13	92	7	62	87	0	12	0	0.54
1662629--1662669	21	2.0	21	100	0	82	87	0	12	0	0.53
1662629--1662676	21	2.3	21	92	0	78	83	4	12	0	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1663324--1663369	20	2.2	21	84	7	58	69	8	13	8	1.36
1663919--1663984	2	34.5	2	73	14	50	50	3	1	45	1.26

Tables:   1   2   3   4   5   6   7   8   9   10

The End!