genome.fa.s7915.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007915.1 Hibiscus syriacus cultivar Beakdansim tig00110318_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1667290

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  4  of  10  ( 1148 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
617925--618021	37	2.6	37	83	6	108	5	27	0	67	1.12
617935--618020	19	4.4	19	79	12	61	4	27	0	67	1.10
618294--618432	39	3.5	40	79	4	167	26	15	40	17	1.89
618560--618625	17	3.8	17	73	13	53	57	0	3	39	1.14
622032--622066	18	1.9	18	88	0	52	28	17	0	54	1.43
639215--639268	2	26.5	2	81	3	63	44	5	3	46	1.44
643032--643064	16	2.1	16	94	0	57	30	30	18	21	1.97
644603--644679	21	3.6	21	76	16	70	29	14	28	27	1.95
645540--645584	23	2.0	23	86	0	63	26	26	26	20	1.99
645692--645742	25	2.0	26	96	3	95	33	23	23	19	1.97
650452--650496	23	2.0	23	81	0	54	28	26	24	20	1.99
652321--652365	21	2.1	21	87	0	63	15	24	28	31	1.96
654014--654096	31	2.7	32	85	7	102	26	18	24	31	1.97
658442--658502	21	2.9	21	95	0	104	9	24	40	24	1.85
658443--658523	21	3.8	21	88	6	92	13	24	38	23	1.91
658462--658545	21	4.0	21	80	10	91	14	25	36	23	1.92
662356--662403	21	2.2	22	82	14	55	37	12	2	47	1.53
666384--666415	12	2.6	13	90	9	50	15	31	3	50	1.60
666460--666504	12	3.8	12	80	13	58	6	24	2	66	1.27
679625--679666	15	2.6	16	81	7	50	33	4	2	59	1.31
683250--684154	83	11.0	82	82	7	860	34	21	18	25	1.96
683250--684158	163	5.5	163	82	5	899	34	21	18	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
684805--684845	20	2.0	20	95	0	73	19	12	46	21	1.82
685268--685317	22	2.3	22	75	6	57	22	0	14	64	1.29
685463--685494	3	10.7	3	100	0	64	34	0	0	65	0.93
685792--685825	14	2.4	14	90	5	50	44	0	5	50	1.26
686910--686965	20	2.7	21	76	23	64	32	10	3	53	1.53
689054--689094	17	2.5	17	92	4	66	19	12	4	63	1.46
689152--689219	27	2.5	29	92	7	101	30	11	5	51	1.62
689159--689227	27	2.7	26	91	8	115	31	8	4	55	1.50
689393--689439	18	2.7	17	87	9	60	21	2	4	72	1.12
689423--689463	21	2.0	21	95	0	73	34	0	2	63	1.08
693038--693146	53	2.1	53	96	3	202	40	24	15	19	1.90
693608--694776	84	14.1	83	78	5	944	29	23	20	25	1.99
693608--694797	330	3.6	327	78	6	1182	29	23	20	25	1.99
693608--694793	246	4.8	246	82	4	1222	29	23	20	25	1.99
696278--696333	18	3.2	16	72	18	58	23	1	3	71	1.11
696387--696460	9	7.9	9	72	14	51	13	8	1	77	1.06
696387--696460	31	2.4	31	78	13	80	13	8	1	77	1.06
696413--696470	18	3.4	16	77	13	55	15	6	0	77	0.97
699982--700038	28	2.0	28	86	0	78	33	17	17	31	1.93
700310--700359	3	16.7	3	100	0	100	34	0	0	66	0.92
701437--701466	2	15.0	2	100	0	60	50	0	0	50	1.00
702263--702307	23	2.0	23	86	0	63	57	0	4	37	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
703825--703873	19	2.9	16	83	16	71	8	24	18	48	1.75
704268--704438	85	2.0	85	100	0	342	43	16	21	18	1.88
706360--706392	16	2.0	17	88	5	50	39	3	6	51	1.42
709531--709601	29	2.5	28	84	11	90	14	8	4	73	1.22
714716--715087	184	2.0	185	93	1	640	41	3	8	46	1.52
717987--718032	23	2.0	23	86	0	65	19	23	23	32	1.97
730749--730807	31	1.9	31	100	0	118	38	8	8	44	1.65
732242--732313	18	3.7	18	75	9	63	19	23	27	29	1.98
732276--732323	23	2.0	24	92	8	80	20	20	25	33	1.97
735838--736700	135	6.4	136	87	1	1175	29	19	20	31	1.97
735838--736700	405	2.1	405	89	1	1309	29	19	20	31	1.97
736928--737007	6	13.7	6	84	10	94	17	3	1	77	0.98
737464--737509	24	2.0	23	87	8	67	80	2	13	4	0.95
737467--737509	14	3.3	12	78	15	50	83	2	11	2	0.83
743833--743864	2	16.0	2	93	0	55	50	3	0	46	1.17
745088--745119	2	16.0	2	100	0	64	50	50	0	0	1.00
755129--755442	152	2.0	158	95	4	568	30	6	16	46	1.71
755550--755580	16	1.9	16	93	0	53	41	6	16	35	1.74
758153--758180	14	2.0	14	100	0	56	35	7	14	42	1.73
760891--760944	20	2.7	20	97	0	99	27	25	5	40	1.78
762759--762899	60	2.3	61	96	1	257	32	10	11	45	1.74
762945--763048	42	2.5	42	81	4	122	32	20	22	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
763204--763305	42	2.5	41	75	3	105	33	17	21	27	1.96
762819--763689	257	3.4	259	86	2	1151	34	16	14	34	1.90
770760--770927	89	1.9	89	93	0	291	54	11	13	20	1.70
772257--772293	20	1.9	19	89	10	58	45	10	24	18	1.81
788189--788293	37	2.8	37	82	0	129	40	14	13	32	1.84
788794--788865	30	2.4	31	81	9	87	25	8	2	63	1.36
788959--789030	30	2.3	30	80	17	69	33	4	1	61	1.24
788989--789040	22	2.3	21	81	12	59	30	3	0	65	1.10
789009--789079	22	3.2	20	75	22	63	28	1	0	70	0.96
789020--789066	4	11.8	4	82	8	51	29	0	0	70	0.88
789012--789064	12	4.4	13	75	15	60	30	0	0	69	0.88
789036--789073	17	2.2	17	86	9	51	28	2	0	68	1.03
789165--789220	20	2.9	19	75	19	62	23	7	1	67	1.24
789629--789717	44	2.0	44	82	8	110	41	2	4	51	1.34
789673--789713	13	3.3	13	80	10	50	48	4	0	46	1.23
790190--790291	49	2.1	49	88	3	152	48	2	3	45	1.36
790344--791021	15	44.4	16	64	27	147	52	2	7	37	1.41
790206--791005	32	25.7	30	65	23	147	52	2	7	38	1.41
790331--790473	55	2.6	54	75	17	134	51	2	9	36	1.47
790443--791013	34	15.6	38	70	22	211	53	2	6	37	1.39
790444--790905	13	37.1	12	65	27	74	53	1	6	37	1.38
790620--791602	2	492.0	2	64	22	146	44	5	3	46	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
790275--790999	290	2.5	290	82	12	853	53	2	7	37	1.41
790200--791019	22	36.2	22	68	23	157	52	2	7	38	1.40
790877--790961	43	2.0	44	86	6	120	54	1	8	36	1.38
790998--791241	66	3.8	62	75	14	185	37	9	1	51	1.43
790988--791392	154	2.6	154	80	11	456	38	9	1	50	1.44
791120--791598	59	8.5	58	71	17	257	38	7	2	50	1.44
791318--791496	17	11.6	16	68	25	86	37	7	2	53	1.41
791320--791490	76	2.2	77	80	12	192	37	7	2	53	1.41
791901--791946	24	1.9	24	82	8	58	34	13	2	50	1.53
792044--793040	6	166.0	6	95	2	836	22	0	27	49	1.54
792057--793032	18	54.6	18	93	3	1321	21	0	28	49	1.53
792057--793032	12	81.9	12	94	3	1321	21	0	28	49	1.53
793006--793050	14	3.2	14	90	0	63	33	0	15	51	1.44
793012--793053	14	3.0	14	92	0	66	38	0	11	50	1.40
793018--793074	20	2.8	21	84	7	55	45	1	7	45	1.40
793174--793211	20	1.9	19	94	5	67	26	10	0	63	1.27
793536--793587	8	7.1	7	78	22	54	55	0	9	34	1.32
793538--793633	22	4.4	22	79	8	108	51	1	11	36	1.45
793549--793641	14	6.3	15	67	18	61	50	1	11	36	1.46
793604--793669	29	2.3	30	84	10	84	50	3	6	40	1.43
793637--793699	21	3.1	21	71	11	69	44	3	3	49	1.34
793868--793906	16	2.4	16	91	0	60	33	17	28	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
795716--795767	2	26.0	2	100	0	104	50	0	0	50	1.00
797124--797198	38	1.9	39	86	2	107	32	2	6	58	1.38
797746--797897	2	78.0	2	71	17	106	48	2	3	45	1.32
798182--798211	13	2.3	13	94	0	51	33	20	13	33	1.91
798249--798296	13	3.5	13	75	10	51	31	20	18	29	1.97
798195--798303	28	3.9	28	91	2	157	28	22	14	34	1.93
798195--798303	55	2.0	56	87	1	157	28	22	14	34	1.93
801357--801391	16	2.2	16	100	0	70	31	17	20	31	1.95
801456--801491	2	18.0	2	100	0	72	50	0	0	50	1.00
802434--802463	2	15.0	2	100	0	60	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10