genome.fa.s7915.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007915.1 Hibiscus syriacus cultivar Beakdansim tig00110318_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1667290

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  3  of  10  ( 1148 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
413797--414021	83	2.7	83	85	3	270	20	15	36	28	1.93
413810--414021	40	5.0	39	73	14	136	20	15	35	28	1.93
416759--416822	19	3.2	20	76	20	62	40	4	4	50	1.44
416772--416824	23	2.3	23	96	0	97	41	5	3	49	1.44
417425--417492	29	2.3	30	87	2	102	60	4	13	22	1.51
418949--419011	3	21.7	3	76	12	51	58	1	3	36	1.23
418939--419000	28	2.2	29	82	8	74	54	1	4	38	1.31
419589--419623	14	2.5	14	90	0	52	17	28	40	14	1.88
420309--420578	110	2.5	110	85	1	362	40	20	15	24	1.90
420986--421015	15	2.0	15	100	0	60	40	26	0	33	1.57
426782--426807	2	13.0	2	100	0	52	50	0	0	50	1.00
433630--433680	24	2.1	24	100	0	102	49	13	7	29	1.70
441419--441449	3	10.3	3	92	0	53	32	3	0	64	1.09
444679--444764	10	8.1	10	71	12	64	60	17	10	11	1.58
445029--445064	14	2.6	14	95	0	63	58	16	11	13	1.63
445570--445632	11	5.9	11	69	14	51	57	3	1	38	1.24
448954--448989	18	2.0	18	100	0	72	11	27	33	27	1.91
449238--449292	24	2.3	23	84	3	65	23	25	23	27	2.00
455535--456197	331	2.0	331	99	0	1317	43	8	9	38	1.67
460108--460172	33	1.9	35	84	6	89	56	1	6	35	1.33
460251--460281	15	2.1	15	93	0	53	45	0	0	54	0.99
460553--460583	15	2.1	15	93	0	53	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
460739--460776	20	1.9	20	88	0	58	21	26	10	42	1.85
469428--469473	22	2.1	22	95	0	83	23	21	15	39	1.92
470797--471278	128	3.8	129	94	1	862	20	24	22	32	1.98
471640--471745	34	3.2	33	87	4	149	35	3	4	55	1.39
472268--472358	21	4.3	20	86	6	103	19	28	34	17	1.95
472265--472358	42	2.2	42	88	3	136	21	28	32	17	1.95
474137--474223	35	2.5	35	81	14	99	58	2	0	39	1.11
474169--474246	34	2.3	34	80	10	88	64	5	0	30	1.15
481583--481641	24	2.5	24	97	0	109	32	3	44	20	1.68
486641--486722	7	10.5	8	70	25	52	76	0	12	10	1.01
486641--486687	7	6.7	7	83	11	53	85	0	8	6	0.75
486640--486680	20	2.0	20	90	9	64	85	0	7	7	0.75
486676--486716	19	2.2	19	87	12	59	73	0	14	12	1.11
486639--486738	27	3.6	26	75	14	94	78	0	13	9	0.97
486780--486865	45	1.9	45	80	4	102	38	16	27	17	1.91
488098--488357	55	4.7	54	87	3	326	27	17	26	28	1.98
488098--488360	110	2.4	110	85	2	359	26	17	26	28	1.98
499760--499817	18	3.2	18	100	0	116	39	10	22	27	1.86
499752--499818	11	6.8	11	73	25	69	38	10	22	28	1.87
506330--506389	19	3.0	20	80	11	61	71	0	8	20	1.11
506432--506460	12	2.3	13	94	5	51	72	0	3	24	1.00
507187--507226	2	20.0	2	100	0	80	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
509004--509053	15	3.3	15	82	2	64	68	0	2	30	1.01
509006--509074	15	4.6	15	77	10	61	69	0	2	27	1.02
513368--513432	2	33.0	2	96	3	123	49	0	0	50	1.00
515670--515702	14	2.5	14	90	9	52	15	18	15	51	1.77
518667--518709	2	22.5	2	90	9	72	53	0	0	46	1.00
520112--520569	126	3.6	125	86	4	568	29	24	19	25	1.98
520762--520866	3	34.3	3	86	3	147	38	1	0	60	1.08
521900--521934	11	3.2	11	100	0	70	25	28	17	28	1.97
522482--522567	23	3.7	23	76	18	97	26	26	27	18	1.98
525629--525661	14	2.4	14	100	0	66	36	21	9	33	1.85
528122--528211	38	2.4	38	86	3	128	12	11	37	38	1.78
528641--528726	38	2.3	38	91	4	138	11	11	39	37	1.78
528006--528991	518	1.9	518	95	1	1719	28	11	18	42	1.84
529252--529298	18	2.7	18	90	3	69	29	31	6	31	1.83
529426--529493	14	4.8	14	77	14	59	69	0	5	25	1.11
529454--529497	4	11.5	4	85	9	65	70	0	2	27	0.99
529449--529497	26	1.9	25	95	4	89	69	0	4	26	1.06
531683--531776	31	3.0	31	75	16	86	30	19	19	30	1.96
536436--536507	30	2.4	30	90	0	108	31	22	19	26	1.97
541781--541941	32	5.1	32	88	5	206	37	18	16	27	1.93
541790--541941	63	2.4	62	84	8	191	38	19	17	25	1.93
547405--547429	2	12.5	2	100	0	50	52	48	0	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
551922--551957	2	18.0	2	100	0	72	50	0	0	50	1.00
554538--554574	20	1.9	19	89	10	58	45	10	21	21	1.82
554560--554589	15	1.9	16	93	6	53	33	10	30	26	1.89
554725--554799	38	2.0	37	82	10	91	49	4	1	45	1.29
555900--555963	28	2.3	28	97	2	121	12	9	34	43	1.75
556475--556553	38	2.1	38	95	0	140	34	22	17	25	1.96
556540--556590	18	2.9	17	85	8	66	27	29	7	35	1.85
558093--558124	16	2.0	16	100	0	64	18	31	18	31	1.95
564270--564403	67	2.0	67	100	0	268	29	16	16	37	1.91
566883--566925	22	2.1	20	83	12	52	60	11	0	27	1.31
567364--567404	20	2.0	20	95	0	73	36	12	24	26	1.91
567454--567502	23	2.2	23	82	13	59	57	10	0	32	1.32
567461--567503	23	1.9	23	86	13	63	55	11	0	32	1.36
568916--568982	20	3.3	20	78	12	75	53	0	4	41	1.21
571553--572008	182	2.5	182	90	1	691	42	13	14	29	1.84
574188--574231	21	2.1	21	95	0	79	40	11	34	13	1.81
574280--574345	33	2.0	33	85	5	89	30	3	43	22	1.68
574530--574565	18	2.0	18	94	0	63	55	0	41	2	1.14
575445--575469	4	6.2	4	100	0	50	24	0	28	48	1.52
576011--576059	19	2.6	19	96	0	89	32	2	10	55	1.45
576409--577327	200	4.6	199	85	3	1211	37	15	16	29	1.90
578856--578893	3	12.7	3	88	0	58	39	0	31	28	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
580232--580992	200	3.8	200	90	0	1155	37	13	15	33	1.86
582565--582614	21	2.4	21	100	0	100	18	24	30	28	1.97
584053--584097	23	1.9	24	82	13	58	46	13	4	35	1.63
585075--585298	106	2.1	105	94	0	394	31	18	20	29	1.97
586635--586717	18	4.6	18	76	0	76	34	21	3	39	1.71
586624--586718	6	15.8	6	69	8	50	35	21	3	40	1.69
586630--586719	36	2.5	36	92	0	153	35	21	4	38	1.73
586858--586920	30	2.1	30	87	0	90	28	17	14	39	1.89
587050--587114	21	3.1	21	84	0	76	44	20	10	24	1.83
588335--588398	30	2.2	30	83	8	78	40	18	4	35	1.72
588352--588419	29	2.3	30	82	7	77	35	23	7	33	1.83
589210--589274	30	2.2	31	80	8	80	36	18	6	38	1.76
590346--590382	19	2.0	19	89	5	58	70	0	0	29	0.88
591861--591895	18	1.9	18	94	0	61	0	8	14	77	0.99
595788--595814	3	9.0	3	100	0	54	66	0	0	33	0.92
597547--597590	23	1.9	23	95	0	79	18	31	9	40	1.81
598269--598604	167	2.0	167	100	0	672	20	29	16	33	1.95
599823--599847	12	2.1	12	100	0	50	0	36	0	64	0.94
605163--605224	19	3.3	19	93	0	106	46	14	11	27	1.78
608660--608699	21	1.9	21	89	0	62	52	5	5	37	1.45
608920--608972	26	2.0	26	100	0	106	15	39	22	22	1.91
609778--609813	15	2.4	15	86	13	56	36	0	0	63	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
609777--609813	14	2.6	15	91	8	60	35	0	0	64	0.94
610328--610386	28	2.0	31	90	9	97	33	6	16	42	1.75
610466--610605	21	6.8	20	83	7	147	23	34	18	23	1.96
610644--610688	21	2.1	21	88	8	65	22	26	28	22	1.99
612155--612197	18	2.3	19	96	4	79	25	0	6	67	1.15
614108--614155	2	24.5	2	95	4	89	47	0	0	52	1.00
615432--615469	19	2.0	19	100	0	76	42	21	15	21	1.89
617926--617986	3	20.0	3	75	21	56	3	29	0	67	1.07
617925--617994	19	3.8	19	92	3	108	5	27	0	67	1.13
617926--618021	15	6.5	15	72	18	60	4	28	0	67	1.09

Tables:   1   2   3   4   5   6   7   8   9   10