genome.fa.s7932.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007932.1 Hibiscus syriacus cultivar Beakdansim tig00110342_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1116633

Tables:   1   2   3   4   5   6   

This is table  2  of  6  ( 634 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
291988--292073	6	14.3	6	80	0	73	38	8	33	19	1.82
291991--292069	36	2.2	36	93	0	131	36	8	34	20	1.84
291991--292073	12	6.9	12	85	0	103	37	8	33	20	1.83
293544--294252	183	3.9	183	96	0	1292	35	13	16	33	1.89
296706--296764	23	2.6	23	94	0	100	37	5	16	40	1.71
297204--297240	18	2.1	18	89	0	56	32	5	10	51	1.60
297185--297248	24	2.6	25	72	13	62	34	4	10	50	1.59
297499--297583	39	2.2	39	89	0	134	48	20	15	16	1.81
301903--301950	2	24.0	2	100	0	96	50	0	0	50	1.00
309191--309218	14	2.0	14	100	0	56	21	28	21	28	1.99
312308--312336	11	2.7	11	94	5	51	27	17	20	34	1.95
314109--314160	20	2.6	20	87	0	77	26	23	17	32	1.96
319138--319189	20	2.6	20	81	0	68	26	25	21	26	1.99
320112--320136	7	3.6	7	100	0	50	28	12	0	60	1.32
323170--323194	2	12.5	2	100	0	50	52	0	0	48	1.00
324363--324424	31	2.0	31	87	6	90	40	12	25	20	1.89
325838--326003	5	33.2	5	100	0	332	60	0	0	39	0.97
328186--328224	19	2.1	19	90	0	60	30	17	30	20	1.96
330837--330940	24	4.5	23	82	10	124	29	22	25	23	1.99
336927--336966	21	1.9	21	100	0	80	25	15	27	32	1.95
339896--339978	26	3.3	26	75	9	75	55	4	4	34	1.42
339955--339986	16	2.0	16	93	0	55	59	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
340175--340220	20	2.3	20	96	0	83	47	0	2	50	1.13
340237--340261	12	2.1	12	100	0	50	48	0	0	52	1.00
343942--343975	18	1.9	18	88	5	52	32	11	5	50	1.63
361732--361811	23	3.5	23	89	0	115	25	27	22	25	2.00
369052--369085	18	1.9	18	88	5	52	17	26	29	26	1.98
369403--369454	26	2.0	26	100	0	104	50	7	23	19	1.73
379597--380315	359	2.0	359	94	0	1251	30	18	16	34	1.93
383939--383987	24	2.1	23	85	11	64	28	6	12	53	1.62
396418--396474	23	2.6	22	78	10	73	15	26	33	24	1.95
398625--398673	3	15.7	3	83	8	62	32	0	0	67	0.91
398622--398673	19	2.7	19	91	5	79	32	0	0	67	0.91
398625--398673	22	2.2	22	88	0	71	32	0	0	67	0.91
403992--404241	43	5.5	42	66	16	131	34	24	18	21	1.96
403896--404787	94	9.0	94	87	9	1174	33	24	19	22	1.97
404175--404832	106	6.3	106	91	4	1038	32	24	19	23	1.97
404604--404759	43	3.4	43	69	13	141	34	25	18	21	1.96
405013--405643	249	2.5	248	90	2	951	29	23	20	26	1.99
405027--405644	84	7.4	84	80	4	680	29	24	20	26	1.99
406397--406442	3	14.7	3	86	8	65	34	0	0	65	0.93
406397--406442	22	2.1	22	91	0	74	34	0	0	65	0.93
409936--409975	21	1.9	21	85	10	55	35	10	2	52	1.48
413144--413257	57	2.0	57	94	0	201	35	8	18	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
414957--415009	20	2.7	20	90	0	88	26	28	20	24	1.99
415197--415240	22	2.0	22	95	0	79	20	45	15	18	1.85
416146--416283	64	2.2	63	84	5	170	37	17	18	26	1.93
417609--417910	149	2.0	147	97	1	568	27	15	20	36	1.93
421177--421317	64	2.2	63	86	5	185	36	18	18	26	1.94
421652--421686	18	1.9	18	88	0	52	31	5	17	45	1.71
422666--422970	149	2.0	149	98	0	592	28	15	20	36	1.93
422948--422993	23	2.0	23	91	0	74	21	23	26	28	1.99
423789--423846	20	2.9	20	89	0	80	17	15	22	44	1.86
423982--424036	25	2.2	24	78	15	58	20	9	18	52	1.71
425163--425207	18	2.5	18	88	0	72	26	44	15	13	1.83
425689--425734	20	2.3	20	85	7	58	34	28	21	15	1.94
425706--425743	20	2.0	20	89	5	60	31	23	26	18	1.97
425744--425801	14	3.9	14	79	16	71	48	24	17	10	1.78
425728--425818	32	2.8	33	93	3	157	47	20	18	13	1.82
425842--425905	32	2.0	32	90	3	101	15	17	17	50	1.79
425893--425948	20	2.8	19	86	7	76	16	25	23	35	1.94
426310--426398	42	2.1	42	85	0	124	21	43	14	20	1.87
427808--427843	14	2.6	14	90	0	54	30	0	22	47	1.52
427980--428047	19	3.8	19	81	14	92	47	16	22	14	1.82
428074--428140	20	3.4	19	68	13	55	16	19	22	41	1.90
429481--429505	12	2.1	12	100	0	50	72	0	28	0	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
431792--431850	19	3.4	19	73	22	74	45	18	22	13	1.84
433429--433606	42	4.2	42	80	0	203	23	17	38	20	1.93
433399--433550	21	7.2	21	61	11	51	21	19	37	22	1.94
433429--433605	84	2.1	85	98	1	347	23	17	38	20	1.93
433824--434007	91	2.0	89	89	7	280	47	19	11	21	1.81
435673--435794	20	6.8	19	67	20	75	42	20	24	12	1.86
435698--435794	33	2.9	33	92	1	158	40	22	25	11	1.87
435795--435860	18	3.5	19	81	4	71	12	16	25	45	1.82
436394--436447	20	2.7	20	97	0	99	25	18	24	31	1.97
436436--436487	21	2.5	21	84	3	70	17	23	19	40	1.91
436518--436558	21	2.0	21	85	0	55	34	31	17	17	1.93
437700--437741	2	21.0	2	100	0	84	50	0	0	50	1.00
441590--441620	12	2.6	12	100	0	62	45	0	12	41	1.42
446986--447318	166	2.0	170	95	4	606	39	16	13	30	1.87
448184--448319	36	3.8	36	82	5	159	19	24	22	33	1.97
448184--448319	72	1.9	72	86	3	193	19	24	22	33	1.97
449529--449593	32	2.0	32	100	0	130	36	24	16	21	1.94
450600--450629	13	2.3	13	94	0	51	20	16	20	43	1.88
455328--455379	21	2.5	21	100	0	104	55	7	19	17	1.65
457107--457150	14	3.2	14	96	3	81	59	0	0	40	0.98
458005--458050	24	1.9	24	90	0	74	17	13	10	58	1.62
458309--458415	23	4.7	22	70	23	80	13	9	15	61	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
461045--461089	20	2.2	20	100	0	90	26	13	20	40	1.89
466974--467050	38	2.0	38	100	0	154	25	10	12	50	1.72
467227--467288	23	2.9	21	85	7	81	22	35	24	17	1.95
470405--470453	18	2.7	18	90	0	80	34	20	24	20	1.96
470442--470500	24	2.5	24	97	0	109	32	23	15	28	1.95
471728--471775	20	2.5	20	86	3	62	52	0	14	33	1.42
494673--494725	21	2.5	21	87	0	79	20	24	18	35	1.95
494715--494848	20	6.7	20	86	1	196	38	20	20	20	1.93
494839--494877	20	2.0	20	84	0	51	35	28	12	23	1.91
498179--498272	20	4.7	20	84	5	102	37	24	19	19	1.94
498179--498272	40	2.3	40	87	3	127	37	24	19	19	1.94
498244--498372	33	3.8	33	93	2	204	41	20	24	13	1.88
498555--498591	14	2.6	14	86	0	56	48	21	0	29	1.50
499996--500057	21	2.7	24	68	14	58	20	16	41	20	1.90
500539--500645	20	5.3	20	91	0	151	38	21	17	22	1.93
500692--500888	20	10.5	20	79	14	197	18	18	20	42	1.90
500735--500865	33	3.7	34	77	8	120	16	19	21	43	1.88
502718--502807	20	4.6	20	81	1	83	46	22	15	15	1.83
503383--503496	20	5.7	20	86	2	165	20	21	21	37	1.94
503493--503538	21	2.2	21	88	0	65	41	17	23	17	1.90
504683--504748	26	2.6	25	68	13	62	57	7	0	34	1.27
505098--505141	5	8.8	5	89	0	61	4	38	38	18	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
511031--511060	6	5.0	6	100	0	60	0	16	50	33	1.46
511341--511395	22	2.5	22	75	0	56	30	9	18	41	1.81
512018--512132	21	5.5	21	76	6	90	29	21	22	26	1.99
512278--512313	10	3.3	11	92	7	56	27	55	16	0	1.42
512282--512316	5	6.6	5	96	3	52	25	54	20	0	1.45
512800--512830	5	6.4	5	96	3	55	0	41	22	35	1.54
512954--513026	20	3.6	20	79	17	96	35	19	21	23	1.96
512950--513089	41	3.4	41	84	9	169	30	20	22	25	1.98
512974--513172	21	9.6	21	76	14	146	28	22	22	27	1.99
512996--513172	62	2.8	62	82	9	159	27	22	22	28	1.99

Tables:   1   2   3   4   5   6