genome.fa.s7932.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007932.1 Hibiscus syriacus cultivar Beakdansim tig00110342_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1116633

Tables:   1   2   3   4   5   6   

This is table  5  of  6  ( 634 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
893557--893631	35	2.1	35	97	0	141	33	28	29	9	1.88
893709--893799	24	3.8	24	84	5	114	36	18	18	26	1.94
893721--893783	23	2.7	24	90	2	101	36	22	17	23	1.95
896268--896309	15	2.9	15	86	6	61	23	26	35	14	1.93
896292--896326	18	1.9	18	88	0	52	17	20	42	20	1.89
896269--896345	13	5.4	13	72	17	55	20	20	41	16	1.90
896284--896344	31	2.0	31	86	0	86	18	19	44	18	1.87
896712--896779	33	2.0	34	97	2	129	29	25	16	29	1.96
897843--897892	24	2.1	23	88	3	73	10	24	16	50	1.75
900641--900682	22	2.0	21	85	4	57	59	11	11	16	1.61
906282--906311	2	15.0	2	100	0	60	50	0	0	50	1.00
909951--910024	37	2.0	37	84	5	96	50	1	4	44	1.29
913811--913842	17	1.9	17	93	6	57	59	0	28	12	1.34
919291--919338	21	2.3	21	85	7	62	33	29	16	20	1.95
919394--919698	42	7.3	42	91	0	497	20	18	24	36	1.95
919837--919863	6	4.5	6	100	0	54	33	51	14	0	1.43
920617--920700	19	4.2	19	77	16	98	32	21	20	26	1.98
920617--920715	19	4.9	19	76	16	83	34	21	19	25	1.96
920646--920802	21	7.6	21	74	14	114	32	26	18	22	1.97
928345--928485	71	2.0	71	94	2	250	54	5	4	35	1.44
928470--928514	20	2.3	21	81	14	60	66	11	0	22	1.22
934675--934717	2	21.5	2	90	0	68	44	0	4	51	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
935252--935324	13	5.9	12	75	15	53	58	0	1	39	1.06
935261--935329	16	4.3	16	72	7	59	57	0	1	40	1.07
935269--935331	32	2.0	32	84	6	83	55	0	1	42	1.09
935608--935633	12	2.2	12	100	0	52	42	15	7	34	1.75
938050--938123	35	2.1	35	87	5	105	36	37	16	9	1.81
939155--939204	24	2.2	23	82	13	59	18	4	12	66	1.39
940064--940123	25	2.4	25	81	15	72	33	1	0	65	1.03
941383--941424	22	1.9	22	85	9	59	28	2	19	50	1.60
942580--942614	18	1.9	18	100	0	70	17	22	34	25	1.96
944710--944749	20	2.1	19	90	4	62	62	0	17	20	1.33
944759--944784	13	2.0	13	100	0	52	38	7	30	23	1.83
946044--946086	19	2.3	20	84	15	65	30	18	32	18	1.95
947740--947798	21	3.1	19	85	7	75	20	23	27	28	1.99
948642--948704	33	1.9	33	90	0	99	41	17	11	30	1.84
948995--949040	17	2.7	17	78	18	51	23	6	0	69	1.11
949016--949089	29	2.6	29	75	16	73	22	8	1	67	1.25
949104--949149	14	3.3	14	82	11	58	30	0	0	69	0.89
952396--952448	25	2.1	25	92	0	88	45	13	16	24	1.83
952847--953389	110	5.0	110	89	2	830	33	22	19	24	1.97
952847--953389	217	2.5	217	90	3	817	33	22	19	24	1.97
953498--954094	84	7.2	82	79	4	558	30	25	20	23	1.98
953496--954094	165	3.6	162	80	5	558	31	25	20	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
953498--954094	249	2.4	246	87	4	842	30	25	20	23	1.98
954436--954504	3	23.3	3	80	16	74	30	0	0	69	0.89
954554--954624	33	2.2	33	97	0	133	42	22	9	25	1.84
954911--954957	17	2.6	19	78	21	57	23	6	0	70	1.10
955021--955068	14	3.4	14	79	0	60	22	6	0	70	1.09
957279--957317	18	2.1	19	90	4	62	0	23	2	74	0.94
957279--957317	14	2.9	14	84	3	53	0	23	2	74	0.94
957780--957859	3	26.7	3	80	7	83	61	0	0	38	0.96
957780--957871	23	3.9	23	79	13	91	61	0	0	38	0.96
958105--958160	17	3.2	17	69	18	51	17	23	8	50	1.74
958121--958311	93	2.1	92	87	5	271	29	17	15	37	1.91
958219--958852	113	5.6	113	93	0	1027	31	17	15	35	1.92
959643--960245	83	7.2	84	95	0	1070	35	22	13	28	1.92
973542--973582	15	2.8	14	88	7	55	2	21	0	75	0.92
973542--973582	19	2.2	19	86	8	57	2	21	0	75	0.92
973542--973572	14	2.1	15	94	5	55	0	22	0	77	0.77
974060--974130	3	22.7	3	88	5	97	63	0	0	36	0.95
978742--978802	22	2.7	22	84	2	77	49	19	19	11	1.78
978742--978809	23	3.0	22	84	2	82	48	19	19	13	1.81
980548--980663	28	4.1	28	96	0	205	28	30	36	5	1.79
980555--980651	14	6.9	14	80	0	122	27	30	36	5	1.79
981272--981405	30	4.4	30	90	2	198	38	0	14	46	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
981318--981402	15	5.6	16	67	21	67	41	0	15	43	1.46
981459--981492	15	2.2	16	94	5	61	38	0	5	55	1.24
982706--982764	23	2.7	21	76	7	55	37	3	3	55	1.33
983819--983939	26	5.0	26	71	20	86	46	7	1	44	1.41
983834--983988	35	4.4	35	76	15	142	45	9	1	43	1.48
983884--983929	12	3.7	12	83	11	65	41	4	4	50	1.42
984438--984770	49	6.6	49	87	8	479	44	11	0	43	1.42
984548--984798	109	2.3	108	93	1	432	45	11	0	43	1.40
989712--989740	5	5.8	5	100	0	58	20	58	0	20	1.39
990359--990397	14	2.7	15	88	7	55	30	0	5	64	1.15
990351--990408	26	2.2	26	84	6	73	34	0	3	62	1.12
992659--992683	12	2.1	12	100	0	50	16	0	0	84	0.63
993702--993757	22	2.5	22	81	16	62	23	5	8	62	1.45
1001717--1002256	137	3.9	137	90	0	830	34	24	15	25	1.94
1003934--1003979	2	23.0	2	100	0	92	50	0	0	50	1.00
1004869--1005115	135	1.8	135	99	0	485	38	9	10	41	1.72
1005451--1005481	16	1.9	16	93	0	53	48	25	12	12	1.77
1006644--1006676	15	2.2	15	94	0	57	63	0	15	21	1.30
1007254--1007311	22	2.6	24	78	15	70	37	13	13	34	1.85
1011793--1011855	1	63.0	1	77	0	63	0	4	6	88	0.61
1011793--1011858	24	2.8	23	86	4	105	0	6	6	87	0.65
1016675--1016715	21	1.9	22	90	5	66	75	0	0	24	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1018852--1018896	3	15.0	3	90	0	72	62	2	0	35	1.08
1025138--1025182	21	2.1	21	95	0	81	17	6	28	46	1.73
1035697--1035752	28	2.0	28	96	0	103	41	35	8	14	1.77
1040297--1040349	18	2.9	18	72	10	54	58	5	11	24	1.54
1045217--1045256	20	2.1	19	85	4	53	62	0	22	15	1.32
1054167--1054335	65	2.6	64	80	2	212	29	16	24	29	1.97
1065258--1065613	177	2.0	178	99	0	705	28	18	22	29	1.97
1065873--1065904	14	2.4	13	94	5	55	78	0	0	21	0.76
1065932--1065971	17	2.2	20	86	13	59	67	0	20	12	1.22
1067279--1067592	36	8.5	36	81	9	305	44	5	3	46	1.43
1068237--1069501	165	7.7	162	84	4	1343	25	19	23	30	1.98
1068237--1069501	329	3.8	329	87	2	1578	25	19	23	30	1.98
1072938--1072970	7	4.7	7	92	0	57	39	15	18	27	1.90
1072935--1072970	14	2.6	14	95	0	63	38	13	19	27	1.90
1073764--1073901	68	2.0	69	98	1	269	22	20	27	29	1.98
1075563--1075592	16	1.9	15	93	6	51	10	26	43	20	1.83
1075757--1075850	3	30.7	3	82	12	111	67	0	4	28	1.10
1075842--1075887	24	1.9	24	86	0	65	52	2	2	43	1.25
1075855--1076149	112	2.6	112	84	6	343	44	5	5	45	1.47
1075855--1076148	75	4.0	76	80	10	290	44	5	5	44	1.48
1075855--1076149	36	8.0	36	81	9	308	44	5	5	45	1.47
1076130--1076167	18	2.1	18	95	0	67	44	7	0	47	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1076094--1076203	54	2.0	54	87	0	157	43	6	3	46	1.46
1076155--1076227	36	2.1	34	87	5	101	46	4	1	47	1.30
1077098--1077149	19	2.8	19	79	2	61	40	1	0	57	1.10
1077127--1077173	24	1.9	25	82	4	60	53	2	0	44	1.12
1077130--1077184	11	4.8	11	76	8	56	50	1	0	47	1.11
1077642--1077719	29	2.6	30	87	2	113	38	8	8	43	1.68
1077644--1077725	15	5.6	15	68	20	57	36	8	8	46	1.65
1081358--1081472	60	1.9	59	83	1	149	26	23	22	26	2.00
1087535--1087580	19	2.3	20	81	7	58	28	28	17	26	1.98
1087658--1087709	21	2.5	21	81	3	61	38	19	25	17	1.93

Tables:   1   2   3   4   5   6