genome.fa.s7932.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007932.1 Hibiscus syriacus cultivar Beakdansim tig00110342_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1116633

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 634 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1087698--1087791	20	4.7	20	80	7	91	31	25	19	23	1.98
1088312--1088378	19	3.5	19	83	2	80	47	23	16	11	1.80
1088396--1088461	33	2.0	34	90	3	107	10	25	22	40	1.86
1088374--1088486	19	6.1	19	78	13	119	12	23	19	44	1.85
1090613--1090679	21	3.2	21	66	6	55	25	35	19	19	1.95
1090566--1090679	42	2.7	41	82	5	113	23	35	18	21	1.95
1092030--1092066	14	2.6	14	86	0	56	32	0	24	43	1.55
1092191--1092247	14	3.7	14	75	20	60	43	22	24	8	1.81
1092173--1092262	33	2.7	33	94	0	153	43	21	22	13	1.87
1092173--1092233	19	3.5	19	74	21	69	44	21	22	11	1.84
1092258--1092408	19	8.7	19	65	21	89	14	23	20	41	1.89
1092262--1092388	33	3.9	32	89	8	202	14	23	19	42	1.88
1092255--1092387	66	2.0	66	98	0	257	15	23	19	41	1.90
1094680--1094704	12	2.1	12	100	0	50	0	28	0	72	0.86
1094879--1094932	24	2.2	24	90	0	81	40	20	16	22	1.91
1095662--1095768	20	5.3	20	84	6	135	22	19	27	30	1.98
1095641--1095777	41	3.4	40	81	2	139	24	18	24	32	1.97
1095765--1095812	20	2.3	20	78	3	51	20	22	14	41	1.89
1095702--1095797	41	2.3	41	85	3	122	20	19	23	35	1.96
1095847--1095887	21	2.0	21	85	0	55	34	31	17	17	1.93
1100355--1100426	22	3.4	22	71	11	78	38	25	18	18	1.92
1100746--1100816	30	2.4	30	95	0	124	25	28	28	18	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1107451--1107549	47	2.2	44	85	7	128	49	4	6	40	1.46
1107542--1107593	20	2.8	18	75	11	50	44	0	1	53	1.11
1107652--1107700	18	2.6	19	80	6	55	26	18	28	26	1.98
1107670--1107715	23	1.9	25	86	8	69	23	19	23	32	1.97
1111005--1111055	12	4.3	12	76	18	54	31	0	1	66	1.03
1111017--1111164	63	2.4	64	92	4	241	41	0	1	57	1.07
1111079--1111161	26	3.3	25	77	16	82	44	0	1	54	1.08
1111096--1111161	24	2.6	26	79	13	84	45	0	0	54	0.99
1111078--1111181	21	4.9	21	76	17	74	43	0	0	54	1.13
1111132--1111198	16	4.4	15	75	14	57	40	1	0	58	1.07
1111167--1111228	19	3.3	19	78	15	58	37	1	0	61	1.06
1111688--1111747	31	1.9	31	89	0	93	41	10	6	41	1.65

Tables:   1   2   3   4   5   6

The End!