genome.fa.s7935.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007935.1 Hibiscus syriacus cultivar Beakdansim tig00110345_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1073174

Tables:   1   2   3   4   5   6   

This is table  2  of  6  ( 616 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
239800--239897	25	3.6	29	73	24	88	80	0	14	5	0.87
239801--239896	34	2.8	34	83	13	101	80	0	14	5	0.88
240223--240298	18	4.1	18	75	18	68	28	9	3	57	1.48
241407--241957	122	4.7	115	83	10	588	39	13	19	27	1.89
242303--242384	3	27.7	3	79	18	84	31	1	1	65	1.08
242303--242365	13	4.5	14	80	11	76	28	1	0	69	0.97
242310--242384	16	4.5	17	81	9	84	32	1	1	65	1.09
242305--242383	13	6.1	13	79	19	69	30	1	1	67	1.07
242303--242384	37	2.2	37	83	16	100	31	1	1	65	1.08
245094--245471	49	7.8	49	83	3	442	30	23	11	34	1.90
246555--246681	3	42.3	3	89	3	193	68	0	28	3	1.05
249507--249705	95	2.1	95	83	0	245	32	16	23	28	1.96
250038--250435	59	6.7	59	90	0	625	34	13	18	33	1.90
256630--256676	20	2.2	22	88	7	71	34	17	19	29	1.94
256547--256767	95	2.4	93	88	1	307	31	17	23	27	1.97
256716--256767	22	2.5	22	90	6	81	30	15	26	26	1.96
257099--257433	59	5.8	58	88	2	476	34	11	17	35	1.87
261503--261892	97	4.0	97	84	5	443	30	21	13	35	1.91
261503--261892	49	8.0	49	85	4	486	30	21	13	35	1.91
261552--261892	146	2.3	146	86	2	472	29	21	13	34	1.92
262398--262446	21	2.5	19	87	9	64	36	20	12	30	1.89
275903--275970	33	2.0	33	88	11	102	51	13	17	17	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
279548--279613	12	5.7	12	73	24	61	43	3	0	53	1.16
279544--279619	32	2.4	29	74	19	73	42	2	0	55	1.14
280661--280739	13	6.7	12	69	16	58	16	2	3	77	1.03
280662--280739	23	3.3	23	77	15	79	16	2	3	76	1.04
285958--286574	248	2.5	247	87	1	914	30	25	20	24	1.99
285958--286678	84	8.7	84	78	5	698	30	25	20	23	1.98
287314--287396	20	4.2	20	70	14	64	39	3	0	56	1.17
287315--287364	12	4.5	12	72	27	56	46	2	0	52	1.12
287311--287386	32	2.4	29	74	19	73	40	3	0	55	1.18
288306--288350	4	11.5	4	78	21	51	22	2	2	73	1.05
288341--288388	24	2.0	23	84	15	62	10	20	0	68	1.18
288513--288560	22	2.2	22	85	7	62	8	8	4	79	1.06
289571--289737	69	2.4	67	81	10	196	43	5	7	44	1.54
290821--290889	31	2.2	31	87	7	95	55	5	5	33	1.48
293398--293480	42	2.0	42	92	0	139	30	20	19	30	1.97
293782--293868	42	2.1	42	93	0	147	27	16	27	28	1.97
302039--302100	21	3.0	21	80	0	70	41	12	40	4	1.65
302584--302750	41	3.9	43	82	3	185	34	23	13	27	1.93
302576--302745	84	2.0	87	83	3	220	33	22	15	27	1.95
302583--302756	44	4.0	44	83	5	203	35	22	14	27	1.94
303763--303797	16	2.2	16	89	0	52	31	8	14	45	1.75
304494--304730	44	5.4	44	78	5	221	33	18	20	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
310367--310472	42	2.5	42	81	1	113	39	17	13	29	1.88
310888--311040	82	1.9	82	81	2	191	27	16	16	38	1.91
318305--318354	22	2.5	20	87	9	66	26	4	24	46	1.70
318314--318358	22	2.0	22	95	0	81	24	4	24	46	1.71
328224--328256	17	2.0	17	88	5	50	51	0	0	48	1.00
339258--339295	20	1.9	20	88	0	58	39	10	15	34	1.82
345491--345641	53	2.8	53	93	0	257	25	17	19	36	1.94
348008--348063	22	2.7	21	81	8	69	33	16	25	25	1.95
347938--348156	95	2.3	94	84	6	264	34	15	21	27	1.94
348086--348156	22	3.5	20	79	9	72	32	14	25	28	1.94
348477--348870	59	6.7	59	91	2	641	34	12	20	32	1.89
349317--349685	182	2.0	183	96	0	686	34	12	20	32	1.90
355096--355147	20	2.6	20	87	0	77	28	17	26	26	1.97
355134--355338	94	2.2	95	81	4	236	32	15	23	28	1.95
355283--355343	22	2.9	21	83	13	81	27	14	27	29	1.95
355686--356020	59	5.7	57	87	4	422	33	11	18	36	1.87
355686--356020	118	2.8	117	88	2	476	33	11	18	36	1.87
356743--356783	21	1.9	22	90	5	66	24	17	19	39	1.92
364808--364849	17	2.5	17	88	0	57	19	11	7	61	1.52
364874--364918	17	2.6	18	86	6	58	20	8	6	64	1.44
365423--365490	17	3.9	18	75	14	63	20	16	2	60	1.48
367334--367387	26	2.1	26	82	6	65	42	11	5	40	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
373406--373451	23	2.0	23	82	0	56	13	30	19	36	1.90
374591--374646	20	2.8	20	94	2	96	21	21	26	30	1.98
380545--380684	16	9.3	14	73	18	70	47	4	0	47	1.27
380680--380726	19	2.6	18	83	6	58	44	4	2	48	1.34
380588--380731	37	3.8	37	77	14	125	47	4	0	46	1.28
380577--380738	2	82.0	2	76	16	124	46	4	0	48	1.26
380791--380823	8	3.7	9	88	12	50	54	3	0	42	1.15
381934--382116	42	4.4	42	74	9	135	28	18	22	30	1.97
387029--387120	34	2.7	34	86	0	112	36	20	16	26	1.93
388888--388948	21	2.9	21	92	4	97	55	14	4	24	1.59
391334--391385	2	26.0	2	100	0	104	50	0	0	50	1.00
401392--401449	15	3.9	15	77	18	68	48	1	0	50	1.11
401392--401449	2	31.0	2	79	19	63	48	1	0	50	1.11
401439--401529	19	4.4	20	74	18	80	50	6	1	41	1.35
401434--401538	42	2.4	43	84	9	133	50	5	0	42	1.32
406193--406227	18	1.9	18	88	0	52	54	0	17	28	1.43
411314--411348	18	1.9	18	88	0	52	54	0	17	28	1.43
417310--417342	16	2.1	16	94	0	57	57	21	12	9	1.62
417408--417482	10	7.7	10	69	21	61	57	21	12	9	1.62
417412--417476	16	4.1	16	95	0	121	56	23	12	7	1.61
418499--418549	24	2.1	24	85	0	66	54	21	11	11	1.68
418519--418550	14	2.3	14	100	0	64	50	28	15	6	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
421410--421457	17	2.8	17	75	9	53	64	4	2	29	1.23
421429--421472	20	2.2	21	84	8	56	63	2	2	31	1.19
421772--421802	14	2.2	14	94	0	53	58	19	12	9	1.62
422039--422072	14	2.4	14	90	0	50	61	17	8	11	1.54
429882--429942	28	2.1	28	82	14	70	24	26	16	32	1.96
429911--430051	54	2.6	53	76	4	138	22	22	19	35	1.96
432085--432124	3	13.3	3	100	0	80	67	0	0	32	0.91
432166--432233	14	5.1	14	71	20	65	55	0	0	44	0.99
435729--435779	24	2.1	24	81	0	57	47	19	11	21	1.81
435735--435842	24	4.6	23	81	6	119	41	19	11	27	1.85
435739--435842	47	2.2	47	84	6	138	41	19	11	27	1.86
436895--436946	27	2.0	27	85	11	72	23	17	17	42	1.89
437932--437982	22	2.3	22	100	0	102	19	27	31	21	1.97
440158--440251	24	4.0	24	84	2	127	36	20	19	24	1.95
440151--440242	47	1.9	48	91	2	150	34	20	18	26	1.96
442393--442425	17	1.9	17	100	0	66	27	36	24	12	1.91
442440--442475	15	2.4	15	90	0	54	11	19	50	19	1.77
447605--447636	2	16.0	2	100	0	64	0	0	50	50	1.00
461841--462041	45	4.5	44	91	5	314	33	9	24	32	1.87
468668--468868	45	4.4	45	91	1	296	33	9	24	32	1.87
470319--470347	14	2.1	14	100	0	58	20	6	27	44	1.77
473344--473370	1	27.0	1	100	0	54	0	0	0	100	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
474143--474186	22	2.0	22	82	8	54	36	2	4	56	1.32
475442--475564	2	61.5	2	98	0	237	49	0	0	49	1.06
484187--484220	13	2.5	13	90	4	50	55	8	0	35	1.31
485241--485281	21	1.9	22	90	5	66	24	21	17	36	1.94
488136--489099	486	2.0	485	97	0	1813	32	13	16	37	1.88
489452--489497	21	2.2	21	92	0	74	58	26	0	15	1.37
491895--491934	21	1.9	21	89	0	62	35	27	7	30	1.84
494342--494378	16	2.2	18	85	9	51	27	5	13	54	1.61
495782--495849	34	2.0	34	97	0	127	41	19	5	33	1.75
496671--496710	20	2.0	21	90	5	64	27	20	20	32	1.97

Tables:   1   2   3   4   5   6