Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007935.1 Hibiscus syriacus cultivar Beakdansim tig00110345_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1073174

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 616 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1048784--1048825
13
3.0
14
79
10
50
7
14
2
76
1.10
1048806--1048835
8
3.8
8
95
0
51
6
13
0
80
0.91
1054391--1054996
254
2.4
254
91
2
975
23
12
28
35
1.91
1054867--1054945
37
2.1
37
90
0
122
12
11
39
36
1.79
1054862--1054949
37
2.6
33
77
13
106
12
11
37
38
1.79
1061203--1061252
15
3.3
15
81
10
50
68
2
2
28
1.12
1062464--1062522
3
19.0
3
82
6
55
57
0
0
42
0.98
1062487--1062534
24
2.0
24
84
8
62
58
0
0
41
0.98
1062748--1063756
113
9.0
113
93
1
1532
29
17
16
36
1.92
1064156--1064210
22
2.5
22
90
0
92
38
14
12
34
1.84
1064570--1064768
54
3.8
53
82
6
219
25
21
15
38
1.92
1065869--1065935
35
1.9
35
87
6
100
34
25
10
29
1.89
1066889--1067229
114
3.0
114
94
0
574
30
20
15
32
1.94
1069485--1069523
11
3.5
11
89
0
60
0
17
0
82
0.68
1071112--1071178
34
1.9
35
96
3
127
29
25
20
23
1.99
1072814--1072866
13
3.8
14
85
7
63
50
9
15
24
1.73

Tables:   1   2   3   4   5   6

The End!