genome.fa.s7943.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007943.1 Hibiscus syriacus cultivar Beakdansim tig00110365_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1187827

Tables:   1   2   3   4   5   6   

This is table  1  of  6  ( 611 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6765--6808	22	2.0	22	82	8	54	59	13	2	25	1.46
14726--14762	2	18.0	2	94	5	65	48	0	2	48	1.15
16285--16316	15	2.0	17	88	11	50	34	3	6	56	1.40
17166--17246	31	2.6	31	96	0	144	48	17	14	19	1.82
17388--17453	22	3.0	22	80	8	55	43	4	4	46	1.44
18523--18674	64	2.4	64	82	6	166	35	20	19	24	1.96
20232--20276	23	2.0	23	81	0	54	26	26	24	22	2.00
20255--20558	149	2.0	149	96	0	563	35	19	17	27	1.95
21175--21232	2	29.0	2	100	0	116	50	0	0	50	1.00
22075--22117	20	2.2	20	86	0	59	16	20	30	32	1.95
25218--25513	145	2.0	144	92	5	499	34	20	18	26	1.96
25920--25962	21	2.0	22	86	4	61	41	20	2	34	1.65
26127--26166	2	20.5	2	89	5	64	47	2	0	50	1.14
27007--27046	20	2.0	20	85	0	53	17	22	30	30	1.97
30127--30171	23	2.0	23	86	0	63	26	28	24	20	1.99
30150--30452	148	2.0	149	97	0	572	34	20	17	26	1.95
31080--31115	2	18.0	2	94	0	63	47	2	0	50	1.15
31966--32010	21	2.1	21	91	0	72	15	24	26	33	1.95
36081--36201	64	1.9	64	89	3	190	35	21	18	24	1.95
36087--36242	64	2.4	65	82	6	167	33	22	19	23	1.97
44053--44100	21	2.3	21	96	0	87	41	12	18	27	1.86
46539--46566	14	2.0	14	100	0	56	14	14	14	57	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46959--46989	16	1.9	16	93	0	53	12	12	16	58	1.64
60124--60454	126	2.7	123	81	6	386	31	18	13	35	1.90
60124--60607	40	11.9	41	73	7	301	32	17	13	36	1.89
60079--60607	121	4.3	121	75	8	326	32	17	14	36	1.90
63477--63535	21	2.8	21	84	0	82	22	6	18	52	1.68
63895--64006	42	2.7	42	84	4	156	36	15	16	32	1.89
64939--64997	21	2.8	21	92	0	91	50	25	5	18	1.67
72827--72853	6	4.5	6	100	0	54	85	0	14	0	0.61
73093--73146	21	2.6	21	93	0	90	40	20	11	27	1.86
73461--73512	19	2.8	19	83	11	63	82	1	3	11	0.88
73461--73518	23	2.5	22	81	8	71	82	1	3	12	0.86
75361--75410	18	2.8	18	81	0	64	26	36	22	16	1.94
78457--78493	19	1.9	19	94	0	65	27	16	35	21	1.94
78332--78509	64	2.8	65	82	2	216	26	17	26	29	1.97
80536--80596	23	2.7	23	81	0	86	18	26	29	26	1.98
87306--87356	23	2.3	23	82	3	68	19	27	23	29	1.98
91477--91564	24	3.7	24	83	6	115	36	19	19	25	1.95
93823--93856	18	1.9	18	94	5	61	11	17	50	20	1.77
93824--93883	18	3.5	17	80	8	59	15	16	46	21	1.83
95952--95992	21	2.0	20	95	4	73	41	19	14	24	1.89
99592--99667	10	7.3	10	69	19	57	31	15	9	43	1.79
99591--99667	21	3.7	21	98	0	145	31	15	9	44	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100586--100625	12	3.2	12	92	3	62	10	12	32	45	1.75
100847--100935	29	3.1	29	100	0	178	13	31	37	17	1.89
100982--101058	15	5.1	15	80	13	95	20	7	53	18	1.69
100974--101084	33	3.5	33	77	20	128	21	9	51	18	1.73
101606--101660	8	6.9	8	77	8	58	29	0	14	56	1.39
101618--101671	24	2.3	23	87	9	81	29	0	12	57	1.36
102383--102426	20	2.2	20	84	8	54	45	9	6	38	1.63
102470--102528	26	2.3	25	75	18	66	47	8	3	40	1.51
105320--105644	26	13.1	26	78	14	271	43	2	10	43	1.53
105524--105579	19	3.1	19	77	12	64	35	0	14	50	1.43
105917--105949	17	1.9	17	93	0	57	36	6	12	45	1.66
105863--105942	24	3.3	23	71	21	67	38	3	8	48	1.52
108302--108389	42	2.0	46	84	10	121	47	12	0	39	1.41
108589--108641	21	2.5	21	93	0	88	3	33	0	62	1.13
108612--108643	17	1.9	16	93	6	55	3	34	0	62	1.11
108631--108690	23	2.5	23	81	5	66	8	35	6	50	1.59
108646--108691	23	2.0	23	91	0	74	10	36	4	47	1.58
108902--108933	13	2.5	13	100	0	64	31	0	46	21	1.52
108934--109042	29	3.8	29	91	2	157	22	33	30	12	1.92
109090--109149	17	3.6	17	65	4	50	18	26	35	20	1.95
109065--109178	26	4.1	26	85	14	165	18	26	35	20	1.95
109065--109195	26	4.5	32	80	19	155	19	25	35	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109063--109195	59	2.3	59	96	3	245	20	25	34	19	1.96
109166--109253	35	2.5	35	94	0	158	19	20	32	27	1.97
109248--109277	12	2.5	12	100	0	60	16	36	20	26	1.93
111876--111925	10	5.1	10	76	13	50	70	0	0	30	0.88
115677--115749	25	3.2	25	59	22	59	34	21	2	41	1.68
115683--115757	21	3.5	21	65	20	55	34	18	2	44	1.64
120505--120539	6	5.8	6	96	0	52	8	40	0	51	1.33
120502--120539	12	3.2	12	92	0	58	7	42	0	50	1.31
120626--120672	22	2.1	22	84	7	60	59	2	14	23	1.46
120625--120674	23	2.2	22	79	10	57	60	2	16	22	1.46
125488--125584	44	2.1	48	86	7	139	28	11	19	40	1.86
135043--135139	42	2.3	41	83	1	122	24	22	23	28	1.99
135039--135150	42	2.7	41	76	6	118	26	22	22	28	1.99
135348--135372	13	1.9	13	100	0	50	32	24	20	24	1.98
135362--135643	80	3.5	80	87	0	431	30	18	22	29	1.97
135601--135713	42	2.7	41	85	6	147	23	18	23	33	1.97
136123--136260	53	2.6	54	90	4	217	26	23	27	22	1.99
136231--136382	55	2.8	55	85	9	174	30	16	24	28	1.96
145808--145859	26	2.0	26	96	0	95	61	5	7	25	1.45
149230--149263	16	2.1	17	88	5	52	64	0	0	35	0.94
154169--154216	23	2.0	24	84	11	64	27	2	0	70	0.98
154410--154517	17	6.2	17	71	18	62	27	3	1	66	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
154486--154529	13	3.4	14	84	12	58	25	2	0	72	0.96
154618--154663	19	2.5	19	83	13	60	17	8	0	73	1.07
155816--155852	19	1.9	19	89	10	58	8	24	0	67	1.17
159236--159275	11	3.9	10	84	15	55	77	5	17	0	0.94
159902--159956	22	2.5	22	90	0	83	38	23	10	27	1.88
160902--161860	106	9.0	106	91	0	1506	34	24	18	22	1.96
162038--162387	83	4.2	83	82	6	377	33	23	19	23	1.97
162086--162396	167	1.9	165	82	4	383	34	24	18	23	1.96
162861--162965	37	2.8	37	83	0	138	40	15	13	31	1.85
163353--163403	19	2.7	20	81	9	70	37	0	0	62	0.95
163350--163403	23	2.4	22	81	9	63	37	0	0	62	0.95
163453--163520	33	2.2	30	84	7	82	30	4	0	64	1.13
163492--163523	13	2.5	13	94	0	55	25	6	0	68	1.12
163678--163735	21	2.8	20	84	12	64	24	1	0	74	0.92
163677--163724	17	2.6	18	84	15	55	25	0	0	75	0.81
173110--173197	23	3.7	23	80	11	99	27	28	20	23	1.99
173952--173980	14	2.1	14	100	0	58	13	34	17	34	1.89
179781--179819	14	2.6	16	88	8	55	61	33	0	5	1.18
181794--181848	23	2.5	22	88	11	78	36	20	20	23	1.95
187499--187554	20	2.7	21	94	2	96	28	21	28	21	1.99
189424--189496	22	3.3	22	79	7	78	35	28	16	19	1.93
189435--189520	23	3.8	23	75	9	86	33	29	15	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
189432--189517	45	1.9	45	90	0	136	31	29	16	23	1.96
189424--189496	23	3.3	22	79	11	71	35	28	16	19	1.93
193389--193456	30	2.3	29	82	2	82	38	8	20	32	1.84
193389--193453	29	2.2	30	80	8	78	40	9	20	30	1.83
194818--194892	17	4.4	17	76	5	71	41	9	8	41	1.66
194792--194892	34	2.9	34	77	10	116	39	8	7	43	1.65
199267--199325	31	1.9	31	85	0	82	35	8	10	45	1.68
199941--200130	90	2.1	92	84	2	240	51	6	10	32	1.60
213029--213077	25	1.9	25	83	4	62	46	0	2	51	1.12
227286--227324	11	3.5	11	89	0	60	61	0	0	38	0.96

Tables:   1   2   3   4   5   6