genome.fa.s7943.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007943.1 Hibiscus syriacus cultivar Beakdansim tig00110365_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1187827

Tables:   1   2   3   4   5   6   

This is table  2  of  6  ( 611 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
227290--227323	14	2.4	14	90	0	50	64	0	0	35	0.94
227938--227995	20	2.8	21	74	7	57	27	20	18	32	1.97
227961--228044	42	2.0	42	83	4	107	30	23	19	26	1.98
227611--228381	262	3.0	259	83	5	976	30	20	19	28	1.97
230478--230553	4	19.8	4	75	15	63	1	18	1	78	0.88
230506--230558	27	1.9	28	84	3	72	3	13	1	81	0.92
230493--230558	23	2.6	26	81	13	68	3	15	1	80	0.91
230524--230577	19	2.8	19	81	10	56	7	7	3	81	0.97
230517--230577	27	2.2	28	82	8	72	6	8	3	81	0.95
233802--234095	147	2.0	147	95	0	534	18	20	15	45	1.85
234895--234933	20	2.1	19	86	13	55	58	7	15	17	1.59
235126--235418	149	2.0	149	84	0	379	20	24	18	36	1.95
237369--237414	22	2.1	21	88	4	65	56	13	10	19	1.66
237364--237418	22	2.6	21	73	18	60	58	10	9	21	1.60
237569--237594	13	2.0	13	100	0	52	38	23	23	15	1.92
244802--244837	18	2.0	18	100	0	72	38	27	22	11	1.88
247093--247125	16	2.1	16	94	0	57	42	21	15	21	1.89
246869--247324	229	2.0	229	91	0	732	38	8	11	41	1.73
247705--247781	25	3.2	24	78	12	77	50	2	3	42	1.34
247821--247865	24	1.9	24	90	4	74	55	0	4	40	1.20
247903--247943	20	2.0	20	85	0	55	43	0	4	51	1.23
256312--256351	21	1.9	21	94	0	71	35	17	22	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
257418--257446	14	2.0	15	93	6	51	37	0	0	62	0.96
263256--263295	20	2.0	21	95	5	73	35	0	22	42	1.54
264415--264562	66	2.2	66	83	2	172	25	16	29	29	1.96
264930--265016	18	5.1	17	75	14	74	65	6	18	9	1.43
273293--273343	15	3.4	15	76	10	59	5	21	37	35	1.78
276261--276391	65	2.0	66	98	1	255	33	15	25	25	1.95
277429--277456	2	14.0	2	100	0	56	50	50	0	0	1.00
280446--280470	2	12.5	2	100	0	50	52	0	0	48	1.00
280757--280791	18	1.9	18	88	0	52	57	0	2	40	1.14
282046--282074	12	2.4	12	100	0	58	41	17	6	34	1.76
283365--283662	107	2.8	107	87	3	393	40	10	12	36	1.77
284299--284370	23	3.1	23	82	4	83	30	12	18	38	1.87
284420--284491	23	3.1	23	80	7	83	31	18	13	36	1.90
284250--284566	121	2.6	121	89	0	481	33	15	12	38	1.84
285645--285828	75	2.5	75	85	3	253	34	11	10	43	1.76
286204--286541	20	16.6	20	79	6	187	38	18	23	18	1.93
286308--286539	40	5.7	40	85	4	293	36	18	25	19	1.94
286628--286695	6	11.5	6	96	1	120	30	52	16	0	1.43
287383--287457	6	13.5	6	95	4	108	0	17	53	29	1.44
287535--287578	20	2.2	20	91	0	70	11	18	15	54	1.70
287565--287779	20	10.6	20	75	8	130	19	20	19	40	1.92
287567--287675	40	2.7	40	85	4	155	22	22	17	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
287729--287779	19	2.6	20	90	3	77	15	17	23	43	1.88
290182--290228	23	2.1	23	88	4	69	31	14	19	34	1.92
291031--291058	2	14.0	2	100	0	56	50	0	0	50	1.00
291403--291439	17	2.2	17	100	0	74	32	24	0	43	1.55
296423--296499	25	3.0	25	71	3	82	20	2	36	40	1.67
301007--301045	20	2.0	20	89	0	60	33	28	10	28	1.90
316426--316473	21	2.2	21	82	10	53	68	4	4	22	1.24
316533--316571	13	2.8	13	88	7	51	71	0	5	23	1.05
316579--316628	18	2.9	17	75	16	50	64	2	8	26	1.32
316658--316686	2	14.5	2	100	0	58	51	0	0	48	1.00
317858--317916	2	32.0	2	75	21	58	49	1	0	49	1.11
318057--318107	17	2.7	19	88	8	70	31	15	19	33	1.93
319199--319336	62	2.2	62	94	1	240	29	18	20	31	1.96
319347--319396	20	2.5	20	93	0	82	32	10	28	30	1.89
333407--333470	31	2.1	31	84	0	83	43	10	10	34	1.75
351191--351463	54	5.1	54	85	5	365	35	17	21	24	1.95
352798--353381	138	4.3	130	83	5	661	31	18	24	26	1.98
352623--353376	276	2.8	268	84	4	913	31	18	24	25	1.98
352896--353381	138	3.5	138	87	1	695	30	17	24	26	1.97
352615--353381	405	1.9	412	82	5	987	31	18	24	25	1.97
355346--355391	23	2.0	24	83	12	60	54	4	30	10	1.55
359752--360343	245	2.4	243	82	2	695	28	16	20	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
360513--360565	20	2.7	20	100	0	106	16	28	5	49	1.69
365295--365320	5	5.2	5	100	0	52	80	0	0	19	0.71
365284--365343	20	3.0	20	78	7	59	70	3	3	23	1.18
368788--368817	11	2.7	11	94	0	51	46	3	0	50	1.18
368912--368979	30	2.4	28	82	7	75	50	1	2	45	1.26
369021--369061	15	2.8	15	88	3	57	39	0	2	58	1.11
369021--369081	14	4.5	14	73	8	54	42	0	1	55	1.09
369047--369094	25	1.9	25	87	8	71	45	0	2	52	1.12
369058--369177	33	3.6	32	74	18	93	45	3	0	50	1.24
369015--369213	70	2.8	70	77	11	158	45	2	1	51	1.22
369341--369372	14	2.3	14	94	0	55	53	3	0	43	1.16
371657--371710	5	9.6	5	78	21	54	20	1	3	74	1.07
371858--371900	17	2.4	17	84	11	50	9	6	9	74	1.22
371837--371952	63	1.9	59	81	10	135	12	8	6	73	1.25
371932--371959	14	2.0	14	100	0	56	14	14	0	71	1.15
373022--373066	20	2.2	21	84	4	56	8	8	4	77	1.10
376879--378006	85	13.3	85	81	3	1146	34	22	19	23	1.96
376886--378006	169	6.6	170	87	1	1342	34	22	19	23	1.96
379917--379966	13	3.9	13	82	12	59	18	0	2	80	0.82
379899--379981	26	3.3	24	74	14	62	15	2	6	75	1.09
379924--379967	13	3.4	13	87	6	63	13	0	2	84	0.73
380030--380088	17	3.6	16	77	11	66	10	8	1	79	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
380030--380082	13	4.0	13	81	11	63	9	9	0	81	0.89
380024--380083	15	3.6	18	72	25	58	10	11	0	78	0.97
380068--380113	16	2.8	17	77	16	51	15	4	4	76	1.11
380111--380153	2	21.5	2	100	0	86	48	0	0	51	1.00
381436--381464	2	14.5	2	100	0	58	51	0	0	48	1.00
381580--381623	18	2.4	18	96	0	79	56	0	6	36	1.26
385220--385245	12	2.2	12	100	0	52	61	15	0	23	1.33
387885--387936	22	2.4	22	90	0	86	55	13	13	17	1.69
388290--388331	20	2.0	21	90	4	68	40	9	21	28	1.84
392758--392837	6	13.3	6	70	23	53	52	2	1	43	1.22
392728--392794	24	2.8	23	81	18	68	47	1	0	50	1.10
392753--392831	29	2.6	30	88	4	106	51	2	1	44	1.23
392916--392957	22	2.0	21	90	9	68	47	11	4	35	1.61
392952--392989	20	1.9	20	88	0	58	44	0	10	44	1.38
393045--393098	24	2.3	23	84	6	65	46	5	7	40	1.55
393076--393116	15	2.6	16	88	7	66	41	4	7	46	1.53
393043--393132	20	4.6	20	73	21	66	42	7	6	43	1.60
393525--393562	20	1.9	20	94	0	67	18	0	34	47	1.49
393530--393580	21	2.5	20	87	3	66	23	3	31	41	1.73
393677--393750	15	4.8	15	74	9	60	47	1	2	48	1.24
393965--394000	18	1.9	19	88	5	56	30	27	0	41	1.56
394088--394145	25	2.4	25	82	5	66	36	5	3	55	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
394114--394217	15	7.0	15	72	14	90	41	3	5	49	1.45
394209--394243	17	2.1	16	89	5	52	42	2	0	54	1.15
394163--394242	11	7.5	11	67	30	50	42	2	3	51	1.33
394127--394241	61	1.9	58	81	13	135	42	3	4	49	1.39
399456--399488	12	2.8	12	100	0	66	24	0	0	75	0.80
399557--399638	39	2.1	39	90	0	128	32	28	4	34	1.78
399580--399631	23	2.3	23	80	6	61	34	26	5	32	1.80
401994--402021	2	14.0	2	100	0	56	50	0	0	50	1.00
402549--402606	18	3.5	18	71	22	63	17	27	20	34	1.95
402567--402620	13	3.8	13	73	21	54	16	27	22	33	1.95

Tables:   1   2   3   4   5   6