genome.fa.s7950.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007950.1 Hibiscus syriacus cultivar Beakdansim tig00110372_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1941792

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  10  of  10  ( 1138 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1783214--1783244	13	2.4	13	94	0	53	45	16	9	29	1.79
1803369--1803417	19	2.6	19	90	0	80	32	28	14	24	1.94
1804111--1804150	2	20.0	2	100	0	80	50	0	0	50	1.00
1804163--1804205	21	2.0	21	90	0	68	18	13	30	37	1.90
1811269--1811311	21	2.0	21	90	0	68	18	13	32	34	1.90
1818277--1818352	22	3.3	22	72	13	80	27	25	25	22	2.00
1818274--1818377	48	2.2	48	96	3	192	26	25	25	22	2.00
1818274--1818389	48	2.4	48	91	2	162	26	26	24	22	2.00
1829106--1829137	12	2.7	12	100	0	64	25	43	15	15	1.86
1830535--1830584	24	2.1	24	85	7	66	60	16	2	22	1.46
1833848--1833896	26	1.9	26	91	4	82	69	0	16	14	1.19
1833849--1833923	26	2.9	25	82	9	80	72	0	17	10	1.12
1842309--1842353	20	2.2	20	96	0	81	11	15	28	44	1.81
1849631--1849663	17	1.9	17	93	0	57	24	12	15	48	1.78
1849676--1849755	36	2.2	36	93	2	135	31	15	3	50	1.61
1849676--1849778	35	2.9	35	89	2	145	33	13	5	47	1.67
1851711--1851740	15	2.1	15	93	6	53	23	6	6	63	1.43
1852555--1852628	24	3.4	22	71	21	66	45	1	0	52	1.09
1852572--1852626	22	2.7	21	77	8	60	45	1	0	52	1.11
1852572--1852628	21	2.8	20	76	10	62	47	1	0	50	1.11
1852597--1852672	24	3.3	23	71	14	59	52	2	0	44	1.14
1858244--1858286	21	2.0	21	86	8	61	55	11	18	13	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1858968--1859018	23	2.2	23	82	0	57	50	7	21	19	1.72
1862572--1863054	201	2.4	201	81	7	531	33	10	21	34	1.88
1862723--1863133	201	2.0	200	82	5	483	34	11	20	33	1.88
1863904--1863957	24	2.2	24	80	6	65	3	33	0	62	1.12
1868230--1868263	18	1.9	18	88	5	52	61	5	0	32	1.20
1869179--1869219	21	1.9	22	85	5	57	46	41	4	7	1.53
1870633--1870674	21	2.0	22	90	4	68	7	2	14	76	1.10
1876174--1876218	23	2.0	23	86	0	63	15	20	13	51	1.76
1881407--1881446	22	1.9	20	100	0	62	12	17	32	37	1.87
1884156--1884199	22	2.0	22	100	0	88	22	4	36	36	1.75
1891461--1891488	13	2.2	13	100	0	56	71	0	7	21	1.09
1899369--1899416	15	2.9	15	84	12	51	70	0	0	29	0.87
1899374--1899427	19	3.0	19	86	7	69	64	0	0	35	0.94
1910851--1910880	13	2.4	13	94	5	53	43	0	30	26	1.55
1916177--1916229	22	2.4	22	96	0	97	62	7	7	22	1.47
1917835--1917866	2	16.0	2	100	0	64	50	0	0	50	1.00
1921393--1921440	23	2.1	23	88	0	69	35	12	18	33	1.89
1921817--1921871	23	2.5	20	76	18	56	43	18	1	36	1.61
1921832--1921892	21	2.7	22	82	10	70	37	19	6	36	1.78
1922258--1922319	22	2.7	23	85	5	81	38	19	6	35	1.77
1922636--1922674	20	2.0	20	89	0	60	48	10	15	25	1.76
1922672--1922725	23	2.5	20	75	18	54	42	18	1	37	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1922687--1922749	23	2.7	23	90	0	90	38	19	6	36	1.77
1921552--1922848	427	3.0	431	98	1	2545	38	13	8	39	1.74
1925303--1925970	184	3.7	184	97	1	1263	34	15	15	34	1.89
1927336--1927386	3	17.0	3	83	0	66	25	33	3	37	1.74
1927336--1927398	12	5.2	12	90	0	81	23	33	6	36	1.80
1927340--1927401	18	3.4	18	88	0	88	20	33	6	38	1.79
1927340--1927401	6	10.3	6	83	0	61	20	33	6	38	1.79
1928857--1930664	198	9.1	198	95	1	3218	33	15	14	36	1.88
1928946--1930713	593	3.0	586	95	2	2826	32	15	14	36	1.88
1930745--1930804	19	3.2	19	95	0	102	56	10	3	30	1.48
1932588--1932652	32	2.0	32	85	8	87	24	44	1	29	1.63
1934751--1934803	24	2.2	24	83	6	63	26	7	13	52	1.66
1935108--1935155	19	2.5	19	77	16	62	22	12	10	54	1.68
1937521--1937563	21	2.0	22	86	4	61	27	16	16	39	1.90

Tables:   1   2   3   4   5   6   7   8   9   10

The End!