genome.fa.s7950.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007950.1 Hibiscus syriacus cultivar Beakdansim tig00110372_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1941792

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  8  of  10  ( 1138 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1462928--1463876	200	4.7	200	96	0	1709	36	14	18	30	1.91
1464598--1464659	25	2.5	25	97	0	115	40	11	12	35	1.80
1465006--1465078	23	3.2	23	88	0	101	34	4	21	39	1.73
1466010--1466256	129	1.9	130	91	0	406	35	14	12	36	1.85
1466723--1466756	16	2.0	18	88	11	54	64	5	2	26	1.30
1466879--1466921	21	2.0	21	100	0	86	39	0	13	46	1.44
1466890--1466975	35	2.5	35	84	0	100	37	1	20	40	1.61
1467328--1467400	23	3.2	23	84	0	101	34	5	19	41	1.74
1467328--1467425	46	2.1	45	83	7	117	33	7	16	42	1.75
1467818--1467890	23	3.2	23	88	0	101	34	4	21	39	1.73
1468248--1468320	23	3.2	23	84	0	101	35	5	19	39	1.75
1467610--1468486	430	2.0	431	96	0	1625	40	7	11	39	1.72
1468738--1468833	23	4.2	23	91	0	147	35	4	21	38	1.73
1467199--1471298	943	4.4	920	87	7	5635	40	7	12	39	1.71
1469191--1469263	23	3.2	23	88	0	110	34	5	20	39	1.76
1469191--1469288	46	2.1	45	81	7	108	33	7	17	41	1.77
1469680--1469752	23	3.2	23	84	0	92	34	4	20	41	1.72
1468983--1469918	489	1.9	490	96	0	1723	40	7	11	40	1.70
1470110--1470174	23	2.8	23	92	0	103	35	6	20	38	1.77
1469941--1470632	229	3.0	230	97	0	1314	45	8	12	33	1.72
1470339--1470403	23	2.8	23	92	0	103	35	6	20	38	1.77
1470570--1470642	23	3.2	23	86	0	101	35	5	19	39	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1471060--1471132	23	3.2	23	88	0	101	34	4	21	39	1.73
1471490--1471576	23	3.8	23	95	0	147	35	4	19	40	1.72
1471325--1471806	254	1.9	253	97	0	910	45	7	13	33	1.72
1471744--1471816	23	3.2	23	88	0	101	34	4	21	39	1.73
1472175--1472270	23	4.2	23	91	0	147	35	4	21	38	1.73
1473982--1474031	20	2.5	20	96	0	91	32	18	18	32	1.94
1473944--1474086	20	7.2	20	72	9	71	30	23	16	30	1.96
1479927--1479970	13	3.4	13	80	0	52	45	0	0	54	0.99
1482396--1482465	31	2.3	31	79	0	77	31	17	12	38	1.87
1488503--1488619	62	1.9	62	96	3	218	48	8	6	35	1.60
1488704--1488737	12	2.8	12	100	0	68	41	17	5	35	1.74
1494757--1494811	18	3.4	18	63	31	52	50	5	7	36	1.53
1494752--1494810	29	2.0	29	96	0	109	49	6	6	37	1.56
1496043--1496082	20	2.0	20	90	0	62	12	27	22	37	1.90
1496912--1496953	14	3.1	14	86	13	70	45	0	19	35	1.50
1496912--1496950	12	3.1	12	92	7	60	43	0	17	38	1.50
1499844--1499888	21	2.1	21	87	0	63	31	28	24	15	1.96
1500468--1500502	18	1.9	18	88	11	54	54	5	17	22	1.64
1500559--1500602	22	2.0	22	86	4	63	45	0	22	31	1.53
1501613--1501657	23	2.0	23	86	0	63	20	24	28	26	1.99
1502246--1502281	15	2.4	15	95	0	63	41	8	22	27	1.82
1503470--1503516	17	2.8	17	81	12	53	25	2	23	48	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1503574--1503603	15	2.0	15	93	0	51	43	3	26	26	1.70
1505377--1505486	29	3.8	29	95	2	195	17	20	16	45	1.85
1511539--1511581	21	2.0	21	82	13	52	58	13	2	25	1.48
1512096--1512129	15	2.3	15	89	0	50	35	32	17	14	1.91
1512214--1512323	29	3.8	29	91	2	177	18	19	16	46	1.84
1512720--1512837	61	1.9	61	81	10	143	29	15	19	35	1.92
1519207--1519252	21	2.2	21	100	0	92	32	4	23	39	1.75
1520680--1520708	6	4.8	6	100	0	58	34	0	0	65	0.93
1521243--1521288	21	2.2	21	88	0	65	21	4	23	50	1.67
1521251--1521301	21	2.4	21	93	0	84	19	5	25	49	1.71
1529635--1529687	24	2.2	24	93	0	88	28	13	20	37	1.90
1534690--1534736	23	2.0	23	100	0	94	31	17	17	34	1.92
1538829--1538882	22	2.5	22	96	0	99	44	11	14	29	1.80
1538864--1538939	37	2.1	37	97	2	145	50	17	5	27	1.67
1539113--1539190	41	1.9	41	81	5	95	37	28	16	17	1.92
1539229--1539324	11	8.5	11	76	10	86	26	21	19	32	1.97
1539229--1539324	23	4.2	23	85	4	115	26	21	19	32	1.97
1540755--1540808	21	2.5	22	82	5	67	22	0	24	53	1.46
1540858--1540905	14	3.4	14	82	0	60	29	0	22	47	1.51
1540858--1540927	21	3.3	20	80	13	79	28	1	24	45	1.62
1540977--1541039	11	5.9	11	73	14	60	38	1	1	58	1.17
1545275--1545317	15	3.2	15	75	24	51	34	30	0	34	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1545484--1545540	19	3.0	20	71	21	50	21	14	0	64	1.28
1547301--1547351	19	2.7	19	100	0	102	25	11	35	27	1.91
1548116--1548202	30	2.9	30	96	0	156	19	14	26	39	1.91
1548176--1548215	21	1.9	21	94	0	71	17	20	30	32	1.95
1548446--1548480	9	3.9	9	84	0	52	51	0	14	34	1.42
1550595--1550754	65	2.5	65	82	0	203	23	27	22	26	1.99
1550750--1551535	393	2.0	391	96	0	1464	32	18	16	33	1.93
1551219--1552407	592	2.0	592	97	0	2252	31	17	16	33	1.93
1554474--1554514	20	2.0	20	100	0	82	39	26	19	14	1.90
1554570--1554638	21	3.2	20	74	22	68	50	8	1	39	1.42
1554571--1554638	22	3.1	22	78	16	86	51	8	1	38	1.42
1554571--1554664	44	2.1	45	94	2	163	47	10	3	38	1.54
1554585--1554658	22	3.4	21	75	14	78	41	12	2	43	1.56
1557125--1557238	40	2.8	41	76	11	108	24	17	32	25	1.97
1557165--1557760	133	4.5	131	81	7	666	23	18	33	24	1.97
1557165--1557760	267	2.2	263	83	7	758	23	18	33	24	1.97
1557782--1557845	31	2.1	31	82	8	78	43	9	18	28	1.81
1557789--1557863	31	2.5	30	79	12	82	42	10	16	30	1.81
1559205--1559262	26	2.2	25	79	11	64	1	18	8	70	1.21
1559210--1559272	18	3.4	18	72	10	56	0	15	9	74	1.06
1566174--1566293	29	4.3	29	74	14	117	52	4	3	40	1.37
1566162--1566284	55	2.3	54	88	2	194	54	4	3	38	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1568389--1568435	24	2.0	24	100	0	94	27	34	0	38	1.57
1571476--1571565	30	3.0	29	78	15	94	34	20	7	37	1.81
1571841--1571876	7	5.1	7	100	0	72	41	13	0	44	1.44
1577094--1577132	20	1.9	21	84	5	53	35	0	7	56	1.28
1578341--1578567	11	21.2	11	65	25	87	50	4	3	41	1.39
1578348--1578750	20	20.2	20	69	19	161	46	2	5	45	1.40
1578348--1578655	40	7.6	39	72	16	229	47	3	5	44	1.43
1578480--1578558	15	5.4	14	73	19	63	53	2	2	41	1.28
1578529--1578680	80	1.9	80	91	2	252	41	1	7	49	1.42
1578531--1578712	80	2.3	80	83	7	232	41	1	6	50	1.38
1578674--1578743	11	6.4	11	73	17	56	47	1	2	48	1.25
1578348--1578764	2	207.0	2	64	20	97	46	2	5	45	1.42
1579676--1579728	19	2.6	21	79	11	65	45	13	7	33	1.71
1579622--1579820	94	2.1	95	80	4	215	39	13	20	27	1.89
1580129--1580572	54	8.2	54	93	1	712	31	11	17	38	1.86
1590472--1590943	54	8.8	54	90	0	714	31	11	17	39	1.85
1590472--1590982	269	1.9	270	87	2	749	31	11	17	39	1.85
1590472--1591019	215	2.5	215	86	2	654	32	11	16	39	1.84
1590472--1590997	108	4.9	107	86	5	594	31	11	16	39	1.85
1591614--1591663	24	2.1	24	88	7	75	42	6	10	42	1.63
1591602--1591817	53	4.3	53	69	18	172	44	9	6	39	1.62
1591671--1591715	13	3.4	13	87	3	63	51	8	0	40	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1591721--1591811	24	4.0	23	69	23	68	42	7	7	41	1.62
1591690--1591791	42	2.4	42	90	0	150	45	9	5	39	1.62
1591733--1591797	20	3.2	20	72	12	60	41	7	7	43	1.62
1591721--1591787	20	3.2	20	74	15	73	43	8	7	40	1.64
1591765--1591821	24	2.4	24	85	11	73	40	7	7	45	1.58
1591819--1591938	20	6.1	19	66	19	68	42	5	5	47	1.47
1591806--1591889	31	2.7	31	77	5	89	42	4	4	47	1.45
1591576--1591853	148	1.9	148	95	0	502	44	8	6	40	1.60
1591897--1591958	29	2.1	29	85	5	81	43	8	4	43	1.55
1592037--1592080	20	2.2	20	84	8	54	50	6	2	40	1.42

Tables:   1   2   3   4   5   6   7   8   9   10