genome.fa.s7962.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007962.1 Hibiscus syriacus cultivar Beakdansim tig00110391_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1774241

Tables:   1   2   3   4   5   6   7   8   

This is table  7  of  8  ( 951 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1275007--1275095	38	2.4	37	85	7	126	13	10	38	38	1.78
1274588--1275132	224	2.4	224	89	2	842	24	11	28	35	1.91
1279665--1279696	16	2.0	17	88	11	50	50	0	0	50	1.00
1279669--1279732	20	3.0	20	69	24	51	54	0	1	43	1.09
1279671--1279732	23	2.8	23	76	9	76	54	0	1	43	1.09
1279685--1279760	31	2.5	31	83	10	86	51	1	3	43	1.28
1283323--1283625	155	2.0	155	93	0	516	30	15	18	35	1.92
1284200--1284238	19	2.1	19	95	0	69	20	38	15	25	1.92
1284186--1284346	65	2.5	65	86	3	218	30	26	16	27	1.96
1284186--1284366	64	2.8	64	83	2	220	29	26	17	27	1.97
1286994--1287325	165	2.0	167	98	1	650	31	11	19	37	1.87
1291792--1291835	21	2.1	21	86	0	61	9	36	15	38	1.80
1292806--1292844	20	2.0	20	89	0	60	25	38	12	23	1.90
1292792--1292954	65	2.5	65	85	5	204	31	25	15	27	1.96
1293874--1293927	18	3.1	18	79	10	58	53	12	7	25	1.65
1293933--1293972	17	2.2	19	86	8	57	32	7	25	35	1.84
1315657--1315698	17	2.5	17	100	0	84	9	7	16	66	1.42
1317105--1317153	19	2.7	17	84	9	53	26	20	28	24	1.99
1317102--1317284	65	2.8	63	82	5	208	26	20	25	28	1.99
1319706--1319734	12	2.4	12	100	0	58	62	0	31	6	1.22
1319809--1319880	21	3.5	19	74	12	54	23	19	26	30	1.98
1319786--1319881	42	2.2	44	85	7	126	26	20	25	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1325678--1325838	65	2.5	65	86	7	204	27	19	23	29	1.98
1325688--1325888	65	3.1	63	76	13	169	26	19	22	30	1.98
1328969--1328996	2	14.0	2	100	0	56	50	0	0	50	1.00
1329328--1329752	55	7.7	55	91	2	594	28	22	15	34	1.94
1329721--1330519	54	14.6	54	91	3	1305	23	25	16	34	1.95
1329721--1330519	109	7.3	108	91	3	1305	23	25	16	34	1.95
1329713--1330519	163	4.9	162	93	3	1305	23	25	16	34	1.95
1332292--1332526	124	1.9	125	84	4	323	23	25	16	33	1.96
1333832--1333883	12	4.2	12	76	16	52	3	25	0	71	1.03
1333830--1333869	17	2.4	16	91	8	62	0	22	0	77	0.77
1333787--1333863	25	3.3	22	72	17	66	6	22	0	71	1.08
1336406--1336451	21	2.1	21	92	4	74	15	23	15	45	1.84
1339993--1340055	4	16.0	4	96	3	119	50	23	0	25	1.49
1340680--1340813	64	2.1	65	83	4	164	29	21	17	31	1.97
1345366--1345445	6	12.3	6	70	15	52	15	2	5	77	1.04
1345369--1345445	13	5.8	13	73	11	50	14	2	5	77	1.04
1345370--1345420	20	2.5	21	90	3	77	15	1	3	78	0.99
1345399--1345447	25	1.9	26	87	4	73	14	6	4	75	1.14
1345640--1345704	32	2.1	31	88	2	94	44	12	20	23	1.84
1348588--1348646	4	14.5	4	79	10	66	23	3	1	71	1.11
1350785--1350862	3	26.0	3	100	0	156	33	0	0	66	0.92
1354881--1354931	20	2.5	20	100	0	102	19	25	35	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1357502--1357540	20	2.0	20	84	0	51	23	7	23	46	1.78
1357721--1357781	20	2.9	21	85	7	70	18	24	34	22	1.96
1365471--1365640	90	1.9	90	91	2	279	45	16	5	31	1.71
1372669--1372704	18	1.9	19	88	5	56	22	16	19	41	1.90
1388851--1388902	15	3.5	15	70	15	54	42	1	3	51	1.31
1388685--1389235	277	2.0	277	89	5	862	34	9	14	41	1.78
1395235--1395268	18	1.9	17	88	5	50	29	0	5	64	1.17
1403483--1403516	18	1.9	17	88	5	50	29	0	5	64	1.17
1404172--1404226	23	2.4	23	84	0	74	34	20	27	18	1.95
1404651--1404692	19	2.1	21	86	8	61	30	16	9	42	1.80
1410376--1410428	20	2.6	21	78	3	63	28	18	24	28	1.98
1421506--1421553	22	2.2	22	92	0	78	37	2	10	50	1.49
1429036--1429075	21	1.9	21	84	0	53	10	35	2	52	1.48
1431226--1431255	12	2.5	12	100	0	60	93	6	0	0	0.35
1435450--1435494	19	2.4	19	100	0	90	31	33	0	35	1.58
1437704--1438189	243	2.0	243	97	0	927	40	16	13	28	1.87
1438659--1438694	2	18.0	2	100	0	72	50	0	0	50	1.00
1439335--1439527	50	3.8	51	82	5	205	50	12	11	24	1.75
1439335--1439526	101	1.9	101	82	4	244	50	13	11	25	1.75
1441365--1441424	18	3.3	18	88	0	84	35	15	30	20	1.93
1442778--1442828	14	3.6	14	84	10	68	15	11	15	56	1.66
1442778--1442835	14	4.1	14	84	8	64	15	10	15	58	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1446991--1447034	21	2.0	21	86	4	61	20	25	29	25	1.99
1447831--1447873	20	2.2	20	100	0	86	27	9	41	20	1.83
1453071--1453116	11	4.2	11	85	0	56	30	15	26	28	1.96
1456504--1456564	21	3.1	21	65	26	60	52	19	6	21	1.68
1456488--1456564	38	2.0	38	100	0	154	50	20	7	20	1.73
1456897--1457023	30	4.3	30	85	1	148	36	25	14	22	1.93
1456897--1457024	60	2.2	59	85	1	166	35	25	14	23	1.93
1457011--1457065	22	2.7	20	81	10	65	23	10	23	41	1.86
1459350--1459394	20	2.2	21	88	4	65	28	17	26	26	1.98
1459826--1459860	14	2.6	13	86	8	52	62	2	0	34	1.10
1461839--1461890	20	2.7	20	82	8	63	36	9	1	51	1.46
1463766--1463853	42	2.1	42	82	0	104	25	11	23	39	1.88
1463889--1463936	21	2.3	21	82	3	53	29	14	18	37	1.91
1465674--1465706	16	2.1	16	94	0	57	57	6	24	12	1.57
1467648--1467702	12	4.6	12	75	22	53	12	10	9	67	1.43
1476125--1476206	20	3.9	20	74	14	67	26	31	24	17	1.97
1477531--1477573	21	2.0	21	86	0	59	30	27	25	16	1.97
1477552--1477663	47	2.4	47	100	0	224	33	25	24	17	1.97
1477600--1477752	67	2.2	69	88	2	220	28	27	26	17	1.98
1478230--1478533	149	2.0	149	98	0	590	27	16	20	36	1.94
1478512--1478556	23	2.0	23	81	0	54	20	22	28	28	1.98
1484615--1484657	21	2.0	21	86	0	59	30	27	25	16	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1484637--1484789	67	2.2	69	88	2	220	28	27	26	17	1.98
1485267--1485570	149	2.0	149	100	0	608	27	17	20	35	1.94
1485549--1485593	23	2.0	23	86	0	63	20	24	28	26	1.99
1492017--1492421	202	2.0	203	99	0	803	25	21	21	30	1.99
1497648--1497689	22	2.0	21	86	13	59	28	2	33	35	1.70
1499164--1499275	56	2.0	56	100	0	224	28	19	16	35	1.93
1508097--1508196	44	2.3	44	96	1	184	38	9	3	50	1.49
1515394--1515439	2	23.0	2	100	0	92	50	0	0	50	1.00
1516883--1516910	4	7.0	4	100	0	56	25	0	0	75	0.81
1520231--1520300	22	3.0	24	75	8	81	42	10	14	32	1.78
1523652--1523708	17	3.2	17	75	15	62	47	0	1	50	1.11
1528120--1528154	18	1.9	18	94	0	61	25	31	22	20	1.98
1534987--1535021	18	1.9	18	94	0	61	34	34	14	17	1.90
1534995--1535037	18	2.4	18	88	0	59	32	32	16	18	1.93
1542786--1543604	4	202.8	4	87	3	1079	25	5	24	44	1.76
1543635--1543730	50	2.0	47	84	13	124	42	4	10	42	1.58
1543584--1543938	116	3.0	116	96	2	638	43	3	9	42	1.55
1543926--1543988	2	32.0	2	96	3	119	49	0	0	50	1.00
1544136--1544211	37	2.0	39	87	10	113	51	6	1	40	1.36
1544136--1544200	2	32.0	2	81	9	69	50	4	1	43	1.32
1544152--1544246	38	2.6	36	82	11	97	49	7	3	40	1.47
1544289--1544356	7	9.7	7	75	0	64	47	33	0	19	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1544289--1544356	21	3.2	21	85	0	91	47	33	0	19	1.50
1544599--1544697	2	48.5	2	95	4	180	49	1	1	48	1.14
1544772--1544846	7	10.7	7	74	5	53	46	26	1	25	1.61
1544772--1544850	28	2.8	28	80	3	97	46	26	1	25	1.60
1545015--1545061	14	3.7	14	71	26	50	51	4	0	44	1.21
1545013--1545062	23	2.1	24	96	3	93	48	4	0	48	1.20
1545343--1545413	16	4.4	16	90	0	106	42	12	26	18	1.86
1545401--1545484	42	2.0	42	100	0	168	33	16	19	30	1.94
1549770--1549889	59	2.0	59	95	0	213	40	20	16	22	1.92
1551804--1551846	11	3.8	11	75	6	50	46	0	0	53	1.00

Tables:   1   2   3   4   5   6   7   8