genome.fa.s7962.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007962.1 Hibiscus syriacus cultivar Beakdansim tig00110391_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1774241

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 951 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1551805--1551859	23	2.4	23	100	0	110	50	0	0	49	1.00
1551816--1551863	12	4.1	12	75	5	53	56	0	0	43	0.99
1555461--1555589	2	63.5	2	72	24	94	42	2	6	48	1.43
1555461--1555589	12	11.5	11	79	14	106	42	2	6	48	1.43
1555461--1555589	30	4.2	31	79	18	119	42	2	6	48	1.43
1556318--1556364	24	2.0	23	87	4	67	8	23	44	23	1.80
1556547--1556590	19	2.2	20	88	4	63	52	6	2	38	1.41
1557727--1557775	23	2.2	22	85	3	62	67	4	16	12	1.37
1564600--1564646	20	2.4	19	82	10	51	31	12	4	51	1.59
1571331--1571433	22	4.8	22	87	7	140	25	30	25	19	1.98
1572467--1572603	59	2.3	58	80	5	175	29	24	17	28	1.97
1573295--1573358	29	2.2	30	82	5	85	32	23	6	37	1.80
1577114--1577161	18	2.6	18	93	3	78	20	18	2	58	1.49
1578256--1578325	35	2.0	35	97	0	131	15	28	35	20	1.93
1578270--1578326	15	3.2	18	65	30	50	14	29	33	22	1.93
1578255--1578331	20	4.1	20	70	21	67	14	27	37	20	1.91
1578519--1578558	20	2.0	20	90	4	64	55	7	0	37	1.29
1581825--1581858	6	5.7	6	100	0	68	32	0	0	67	0.91
1587169--1587209	15	2.9	15	78	10	50	60	2	0	36	1.10
1588606--1590119	506	3.0	506	96	0	2742	22	21	25	30	1.99
1590347--1590449	35	2.9	35	92	0	161	20	27	18	33	1.96
1600788--1600831	2	22.0	2	100	0	88	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1601015--1601061	21	2.4	19	80	16	51	34	2	6	57	1.36
1601127--1601163	5	7.6	5	96	3	67	59	0	0	40	0.97
1602561--1602585	13	1.9	13	100	0	50	48	0	4	48	1.20
1604222--1604337	47	2.5	46	80	6	128	25	22	8	43	1.82
1604358--1605586	81	15.2	81	90	1	1809	31	21	11	35	1.89
1605672--1605898	55	4.1	55	85	5	271	33	18	13	34	1.89
1608621--1608653	2	16.5	2	100	0	66	48	0	0	51	1.00
1610617--1611732	81	13.9	81	88	2	1570	31	22	10	35	1.89
1611877--1612043	55	3.0	55	87	6	248	34	17	11	37	1.86
1618004--1618030	2	13.5	2	100	0	54	51	48	0	0	1.00
1626416--1626467	17	3.3	15	80	15	61	71	1	1	25	1.07
1626416--1626467	8	6.6	8	75	20	56	71	1	1	25	1.07
1627200--1627271	32	2.2	32	97	0	135	31	16	15	36	1.90
1631495--1631571	40	1.9	40	97	0	145	35	16	16	31	1.92
1635519--1635556	18	2.1	18	100	0	76	15	21	47	15	1.82
1640679--1640740	23	2.7	23	89	0	106	33	29	19	17	1.95
1653151--1653242	45	2.0	45	100	0	184	54	10	13	21	1.69
1661517--1661562	22	2.1	22	91	0	74	47	4	17	30	1.67
1662008--1662055	21	2.3	21	92	0	78	33	22	35	8	1.84
1666818--1666869	16	3.2	16	86	0	68	48	19	15	17	1.82
1666889--1666919	16	1.9	16	93	0	53	48	35	12	3	1.58
1666894--1666977	31	2.6	32	81	7	91	41	29	13	15	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1667037--1667092	18	3.1	17	73	17	51	57	1	0	41	1.09
1667313--1667376	34	1.9	32	87	12	94	48	1	1	48	1.20
1667684--1667769	31	2.7	32	82	7	104	36	32	11	19	1.88
1667690--1667783	32	3.0	31	82	4	100	34	31	11	22	1.90
1667702--1667927	112	2.0	113	99	0	445	38	28	10	22	1.88
1667834--1667895	32	1.9	32	90	0	97	33	32	9	24	1.88
1667701--1667963	112	2.4	112	91	3	370	40	28	9	20	1.85
1670743--1670799	28	2.0	28	96	0	105	33	28	17	21	1.96
1672762--1672944	60	3.1	59	78	4	197	43	4	17	34	1.69
1674198--1674248	22	2.3	22	96	0	93	54	0	15	29	1.41
1680241--1680277	3	12.7	3	88	5	58	32	2	0	64	1.07
1681434--1681464	2	16.0	2	93	6	55	51	0	0	48	1.00
1691883--1691914	17	1.9	17	93	6	57	53	0	6	40	1.26
1703868--1703943	11	6.5	11	68	25	50	63	3	3	28	1.30
1705390--1705415	2	13.0	2	100	0	52	50	0	0	50	1.00
1705416--1705473	3	19.0	3	82	10	73	62	0	1	36	1.06
1705601--1706625	76	13.5	76	96	1	1793	36	21	19	22	1.95
1707298--1707352	22	2.5	22	87	0	83	36	14	14	34	1.87
1709932--1710245	115	2.7	113	86	5	425	32	20	14	32	1.92
1710152--1710345	92	2.1	92	87	1	282	36	19	14	29	1.92
1716485--1716514	7	4.3	7	100	0	60	70	0	0	30	0.88
1716964--1717002	17	2.3	18	82	13	55	69	0	7	23	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1718462--1718519	3	19.3	3	77	13	57	58	0	1	39	1.08
1726191--1726239	18	2.6	19	78	18	57	63	0	0	36	0.95
1726268--1726406	14	10.5	14	73	17	127	56	1	0	42	1.08
1726217--1726351	64	2.1	60	78	18	148	54	2	0	42	1.18
1726297--1726458	40	4.2	40	83	12	221	58	1	0	39	1.09
1726301--1726406	54	2.0	54	87	7	155	58	1	0	39	1.09
1726420--1726470	12	4.3	12	76	18	54	66	1	0	31	1.03
1727384--1727416	14	2.4	14	94	0	57	6	12	27	54	1.60
1727385--1727459	24	3.1	24	82	3	80	13	9	20	57	1.63
1727390--1727435	14	3.2	15	87	6	60	10	6	23	58	1.55
1728185--1728251	16	4.3	16	92	3	102	10	10	19	59	1.58
1728183--1728243	32	1.9	32	96	0	113	8	13	22	55	1.64
1728313--1728345	16	2.1	16	100	0	66	6	12	24	57	1.57
1729107--1729166	2	30.0	2	100	0	120	50	0	0	50	1.00
1730420--1730767	130	2.7	129	82	6	393	31	15	13	39	1.86
1730630--1730996	179	2.1	178	84	1	466	31	14	14	39	1.86
1731115--1731155	21	2.0	21	90	0	64	24	14	19	41	1.89
1731013--1731363	179	2.0	179	83	2	454	33	12	13	39	1.83
1730630--1731424	378	2.1	380	80	5	903	33	13	13	39	1.84
1735059--1735086	14	2.0	14	100	0	56	28	0	28	42	1.56
1735373--1735462	2	45.0	2	100	0	180	50	0	0	50	1.00
1735772--1735806	18	1.9	18	88	0	52	34	14	28	22	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1736308--1736368	21	2.9	21	95	0	104	47	6	9	36	1.63
1736335--1736953	200	3.1	201	87	3	890	33	11	14	40	1.82
1736938--1737157	120	1.8	120	91	0	359	33	13	11	41	1.80
1738546--1739376	279	3.0	279	94	0	1421	32	17	17	32	1.93
1745674--1745798	46	2.7	46	86	2	162	21	21	14	42	1.88
1745780--1746097	98	3.2	98	84	3	426	29	21	14	34	1.93
1745780--1746097	49	6.5	49	75	2	298	29	21	14	34	1.93
1749753--1749805	27	2.1	24	82	10	61	45	15	1	37	1.57
1751158--1751774	98	6.3	98	89	1	968	29	21	15	33	1.94
1751158--1751774	195	3.1	195	90	1	968	29	21	15	33	1.94
1751158--1751774	49	12.6	49	79	1	653	29	21	15	33	1.94
1754759--1754805	2	25.5	2	83	16	66	55	0	0	44	0.99
1762726--1762754	15	1.9	15	100	0	58	27	0	31	41	1.56
1764517--1764558	22	1.9	22	100	0	84	23	14	2	59	1.47
1764826--1764908	23	3.6	23	91	0	130	21	26	27	24	1.99
1765872--1765939	16	4.2	16	90	0	109	25	29	4	41	1.75
1770643--1770710	9	8.6	7	73	23	55	26	27	5	39	1.79
1770643--1770710	16	4.2	16	90	0	109	26	27	5	39	1.79
1772464--1772719	20	12.6	20	75	7	212	37	25	18	18	1.93
1772464--1772716	41	6.2	41	85	3	327	37	24	18	18	1.93
1772793--1772832	21	1.9	21	84	0	53	20	22	15	42	1.88
1772830--1772955	20	6.3	20	88	1	175	37	20	20	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1773817--1773870	24	2.2	24	93	0	90	20	18	20	40	1.91

Tables:   1   2   3   4   5   6   7   8

The End!