genome.fa.s7980.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007980.1 Hibiscus syriacus cultivar Beakdansim tig00110419_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1499237

Tables:   1   2   3   4   5   6   7   8   

This is table  2  of  8  ( 886 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
248452--248970	195	2.6	196	82	7	581	40	12	15	31	1.85
248975--249098	64	1.9	64	93	3	214	33	8	9	48	1.67
248965--249127	64	2.6	63	83	6	204	34	7	9	47	1.66
255776--255842	33	2.0	33	97	0	125	34	14	19	31	1.92
266011--266133	51	2.4	50	76	16	128	49	1	0	48	1.10
266118--266168	23	2.2	23	89	6	77	52	1	0	45	1.12
266095--266265	54	3.1	54	74	16	156	49	1	1	47	1.16
266075--266180	26	4.0	26	67	21	67	47	0	0	51	1.07
266227--266299	23	3.1	23	82	5	76	52	2	0	45	1.15
266560--266595	15	2.5	15	90	4	56	38	8	13	38	1.75
266600--266661	14	4.4	14	87	0	70	38	14	8	38	1.76
266610--266654	14	3.2	14	93	0	72	46	11	6	35	1.66
266938--267075	70	2.0	70	79	2	152	25	17	8	48	1.75
268476--268535	3	20.3	3	76	10	61	56	0	3	40	1.16
268459--268535	36	2.2	34	78	14	86	55	1	3	38	1.26
268478--268555	37	2.1	37	90	2	122	53	0	2	43	1.14
268730--268775	23	2.0	24	91	4	76	50	4	13	32	1.61
270584--270839	127	2.0	127	96	0	467	22	30	23	23	1.99
271219--271474	127	2.0	127	96	0	476	21	31	23	23	1.99
271540--271892	132	2.7	133	81	6	389	21	18	28	30	1.97
272626--272744	21	5.8	20	80	8	114	36	22	18	21	1.95
272621--272744	42	3.0	41	72	12	126	35	23	17	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
272626--272763	21	6.7	20	76	12	84	37	23	18	20	1.94
272711--272879	20	8.4	20	84	3	198	35	25	19	19	1.95
272711--272900	20	9.5	20	83	2	148	36	24	19	19	1.95
273583--273629	24	2.0	24	87	8	69	25	14	21	38	1.92
274916--275126	33	6.2	33	87	9	318	45	18	22	13	1.83
275053--275107	14	3.6	14	73	21	56	45	20	23	10	1.82
274958--275134	52	3.4	52	81	10	245	45	16	23	14	1.84
274930--275134	19	11.8	19	75	21	218	45	18	21	14	1.84
274930--275134	104	2.0	104	94	3	360	45	18	21	14	1.84
275141--275256	53	2.2	53	96	1	216	14	23	18	43	1.86
275159--275256	19	5.4	19	84	13	143	15	21	17	45	1.84
275354--275411	14	4.4	13	77	10	55	50	20	0	29	1.49
275967--276140	20	8.6	20	82	6	199	18	18	26	36	1.94
276127--276209	21	4.0	21	73	6	78	25	16	24	33	1.96
276107--276205	42	2.4	43	77	11	100	21	18	23	37	1.94
277184--278200	200	5.1	200	81	6	1178	36	13	16	33	1.88
277294--278200	203	4.6	190	79	9	807	36	13	16	32	1.89
277676--278194	202	2.6	199	82	6	591	35	13	17	33	1.89
277301--278056	386	2.0	388	91	1	1239	36	14	16	32	1.88
278170--278221	21	2.5	21	96	0	95	36	11	17	34	1.86
278630--278658	15	1.9	15	100	0	58	20	44	6	27	1.77
278994--279039	2	23.0	2	100	0	92	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
281463--282230	199	3.9	198	87	5	1057	39	13	15	31	1.87
281463--282230	399	1.9	398	87	3	1116	39	13	15	31	1.87
285905--286422	200	2.6	199	83	3	614	39	11	14	34	1.81
292290--292337	20	2.5	19	83	6	60	62	0	0	37	0.95
293305--293344	15	2.7	15	88	11	64	0	30	25	45	1.54
294938--295002	33	2.0	33	90	0	103	43	12	16	27	1.84
295223--295255	15	2.1	16	94	5	59	60	3	0	36	1.12
297340--297509	40	4.2	40	67	11	96	32	16	22	28	1.96
297329--297447	40	2.9	41	77	6	116	31	13	25	30	1.94
297329--297447	42	2.9	42	76	8	120	31	13	25	30	1.94
297400--297567	82	2.0	83	86	5	234	33	18	20	27	1.96
297355--297549	41	4.8	40	72	17	125	31	18	22	27	1.97
297441--297573	42	3.2	40	72	18	121	33	19	18	27	1.96
297579--297741	41	3.9	43	81	6	192	33	14	19	32	1.92
297560--297755	84	2.3	84	81	4	236	33	14	18	33	1.91
299280--299362	41	2.0	42	81	6	98	28	10	21	38	1.87
307394--307443	21	2.4	21	82	0	64	46	20	32	2	1.62
307447--307513	21	3.2	21	80	0	71	49	17	28	4	1.66
307930--308223	43	6.9	43	81	3	245	35	24	16	23	1.95
321787--321814	2	14.0	2	100	0	56	50	0	0	50	1.00
322404--322632	64	3.6	63	77	9	173	31	25	16	27	1.96
322585--322632	18	2.6	19	84	12	57	25	29	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
331661--331960	150	2.0	150	99	0	591	40	17	18	24	1.91
334193--334254	31	2.0	31	90	0	97	27	6	25	40	1.80
334248--334322	38	1.9	39	86	2	107	17	9	28	45	1.79
348032--348100	29	2.4	29	85	4	95	27	23	10	39	1.87
359932--359959	2	14.0	2	100	0	56	50	0	50	0	1.00
361587--361670	24	3.4	24	75	18	82	39	4	2	53	1.35
361605--361680	25	2.9	25	73	21	75	42	7	1	48	1.40
361707--361783	32	2.4	32	75	16	79	46	3	0	49	1.20
361824--361865	2	21.0	2	100	0	84	50	0	0	50	1.00
362553--362589	16	2.2	17	90	4	58	27	0	10	62	1.28
369485--369551	33	2.0	33	97	0	125	50	11	4	32	1.59
371869--371920	24	2.2	24	82	0	59	51	21	17	9	1.73
372105--372181	14	5.8	14	78	17	67	59	11	12	15	1.61
372105--372184	28	3.0	28	73	14	78	58	11	13	16	1.62
380726--380766	21	2.0	21	100	0	82	39	4	29	26	1.77
381657--381702	24	1.9	24	95	0	83	28	6	30	34	1.82
382265--382308	2	22.0	2	100	0	88	50	0	0	50	1.00
395038--395155	29	4.1	29	98	0	227	14	31	36	17	1.90
395209--395289	15	5.2	15	81	12	83	20	7	54	17	1.67
395195--395307	32	3.5	32	84	9	149	21	8	52	17	1.72
395858--395901	21	2.1	21	91	0	70	29	0	15	54	1.42
395878--395940	28	2.2	30	91	5	103	31	0	11	57	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
396444--396488	21	2.2	21	84	4	56	35	0	8	55	1.31
396748--396806	26	2.3	25	75	18	66	47	8	3	40	1.51
399687--399730	14	3.3	14	75	12	56	43	2	11	43	1.53
399684--400103	26	17.2	26	76	15	278	42	2	10	44	1.52
399714--399783	22	3.1	21	80	10	68	47	2	8	41	1.49
399761--399816	19	3.1	18	77	12	62	37	0	14	48	1.44
399885--399940	19	3.1	19	77	12	64	35	0	14	50	1.43
399631--400095	124	3.8	124	95	3	829	43	2	10	44	1.52
400018--400050	8	4.2	8	84	7	50	36	0	12	51	1.39
400303--400335	17	1.9	17	93	0	57	36	6	12	45	1.66
400249--400328	24	3.3	23	71	21	67	38	3	8	48	1.52
402561--402642	34	2.6	32	81	12	89	48	14	0	36	1.44
402687--402808	43	3.0	40	71	24	110	46	12	0	40	1.41
402680--402769	43	2.0	45	87	10	114	47	12	0	40	1.41
402974--403024	21	2.5	21	93	3	86	1	33	0	64	1.05
402959--403032	4	18.5	4	75	8	62	2	32	0	64	1.07
403036--403081	23	2.0	23	100	0	92	8	39	4	47	1.54
403094--403145	25	2.1	25	100	0	104	26	34	11	26	1.91
403317--403348	13	2.5	13	100	0	64	31	0	46	21	1.52
403349--403457	29	3.8	29	92	2	175	22	33	31	13	1.93
403480--403535	26	2.2	26	96	0	103	19	25	35	19	1.95
403522--403609	35	2.5	35	96	0	158	19	19	32	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
403604--403645	12	3.5	12	93	0	75	19	35	19	26	1.95
403654--403719	35	2.0	32	86	13	91	19	19	36	24	1.95
404176--404203	10	2.8	10	100	0	56	71	7	10	10	1.31
404702--404754	3	16.7	3	88	3	61	1	32	0	66	1.03
410945--410996	21	2.7	19	86	13	79	21	11	13	53	1.70
411248--411306	22	2.7	22	81	5	66	32	27	16	23	1.96
413757--414038	120	2.3	118	82	5	334	47	8	14	29	1.74
414838--414942	23	4.7	22	74	14	72	65	0	2	30	1.13
414868--414947	20	3.8	22	75	16	73	62	1	2	33	1.16
414871--414944	25	2.8	25	79	10	76	63	1	1	33	1.11

Tables:   1   2   3   4   5   6   7   8