genome.fa.s7980.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007980.1 Hibiscus syriacus cultivar Beakdansim tig00110419_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1499237

Tables:   1   2   3   4   5   6   7   8   

This is table  4  of  8  ( 886 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
584404--584457	23	2.3	24	75	12	58	44	3	5	46	1.44
584422--584619	35	5.8	33	75	15	129	41	5	8	44	1.57
584743--584773	12	2.7	11	90	9	53	35	25	29	9	1.88
587959--588023	19	3.4	19	97	0	121	10	9	10	69	1.38
590926--591709	84	9.5	84	79	6	854	28	26	21	23	1.99
590927--591751	165	5.1	164	88	4	1086	28	26	21	23	1.99
590926--591776	249	3.5	248	82	5	1027	28	25	21	23	1.99
592430--592584	37	4.3	36	80	12	151	43	5	7	44	1.53
592607--592679	32	2.2	32	80	7	76	38	2	8	50	1.47
592695--592723	5	5.8	5	100	0	58	20	0	0	79	0.74
592761--592792	12	2.7	12	90	0	55	37	25	28	9	1.87
593448--593502	23	2.5	22	82	5	67	61	27	5	5	1.40
594797--594826	6	5.0	6	100	0	60	16	83	0	0	0.65
595081--595139	31	1.9	31	86	6	84	25	22	25	27	2.00
596167--596226	28	2.1	28	93	0	111	31	13	16	38	1.87
597952--598124	60	2.9	59	83	6	190	43	4	19	32	1.70
599907--599951	12	4.0	12	75	13	51	44	22	13	20	1.85
599982--600024	21	2.0	21	90	0	68	23	27	25	23	2.00
600829--600929	31	3.2	32	75	9	100	30	11	18	38	1.87
604713--604910	43	4.6	43	90	2	283	19	24	23	33	1.97
606835--606861	3	9.0	3	100	0	54	66	0	33	0	0.92
607663--607734	34	2.2	33	95	5	128	37	8	19	34	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
621886--621937	19	2.8	19	73	2	52	40	5	1	51	1.37
624949--624982	18	1.9	17	88	5	50	26	2	2	67	1.19
625975--626060	18	4.8	19	84	12	128	41	15	12	30	1.84
625973--626063	35	2.6	35	92	1	155	40	16	13	29	1.86
626952--627088	68	2.0	69	84	9	181	47	7	2	42	1.46
632920--633519	298	2.0	298	97	0	1128	33	15	23	28	1.95
635629--635676	24	2.0	24	92	8	80	29	4	25	41	1.74
635976--636016	21	1.9	22	90	5	66	75	0	4	19	0.98
636487--636516	12	2.5	12	88	0	51	66	3	23	6	1.30
636669--636833	76	2.2	76	87	3	235	57	10	2	29	1.45
638769--638869	50	2.0	50	90	3	159	30	14	4	49	1.65
643926--643973	16	3.1	16	78	3	53	22	2	6	68	1.23
646614--646670	9	6.7	9	74	11	57	64	1	1	31	1.13
646616--646668	16	3.2	17	84	10	65	66	1	1	30	1.13
646614--646670	25	2.2	26	84	3	71	64	1	1	31	1.13
646622--646671	17	3.0	17	91	2	75	60	4	2	34	1.27
647038--647100	29	2.1	29	85	8	83	25	14	31	28	1.95
649215--649271	21	2.7	21	69	0	51	28	19	17	35	1.94
649051--649286	42	5.6	42	85	1	240	25	24	21	28	1.99
649078--649286	83	2.5	83	82	3	231	25	24	20	28	1.99
649043--649284	125	1.9	126	81	2	290	25	24	20	29	1.99
665760--665832	35	2.1	35	100	0	146	24	10	15	49	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
666334--666393	22	2.6	23	76	10	68	43	3	1	51	1.28
666323--666431	27	4.2	25	76	13	87	42	3	0	53	1.25
666565--666661	24	3.4	29	75	16	105	50	6	7	36	1.55
667366--667513	25	5.5	26	67	21	81	40	2	0	56	1.19
667384--667468	27	3.1	27	77	12	91	40	1	0	58	1.05
667430--667481	24	2.1	25	82	10	63	42	3	0	53	1.19
667450--667543	31	3.0	31	78	10	93	37	7	2	53	1.41
667370--667513	56	2.6	55	77	10	150	40	2	0	55	1.19
667608--667658	23	2.2	24	89	3	77	58	1	0	39	1.09
682671--682806	70	1.9	71	83	4	177	27	13	15	44	1.83
683231--683300	34	2.1	34	97	0	131	27	11	14	47	1.78
685041--685123	30	2.8	28	82	8	94	2	8	26	62	1.36
685041--685148	30	3.6	30	78	12	82	1	9	25	62	1.35
690593--690617	12	2.1	12	100	0	50	56	8	0	36	1.29
707239--707328	23	4.1	21	71	13	74	22	6	13	57	1.59
709476--709513	19	2.0	19	89	0	58	44	2	0	52	1.14
709555--709616	23	2.7	23	76	16	67	51	0	0	48	1.00
709790--709844	28	1.9	29	85	3	76	54	0	1	43	1.10
709785--709847	28	2.2	27	81	10	72	55	0	1	42	1.09
713391--713844	55	8.3	55	89	2	522	30	26	13	29	1.94
713399--713823	218	1.9	218	82	0	519	29	26	13	29	1.94
713838--714145	54	5.8	54	84	6	251	22	25	19	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
713839--714092	51	4.9	51	85	7	282	22	26	18	32	1.97
714077--714213	68	2.0	68	88	2	204	22	20	24	32	1.98
714145--715069	54	17.5	54	84	6	928	20	27	19	32	1.97
713839--715069	159	7.7	159	84	7	1310	21	26	19	32	1.97
716372--716404	10	3.5	10	84	16	52	0	9	9	81	0.87
716362--716404	18	2.5	16	88	11	59	0	11	6	81	0.87
724693--724775	21	3.8	22	81	7	89	21	36	24	18	1.95
724691--724753	21	2.9	21	88	4	90	20	34	25	19	1.96
734577--734615	3	13.7	3	89	10	64	66	0	0	33	0.92
734577--734615	11	3.5	11	89	3	60	66	0	0	33	0.92
736196--736283	21	4.5	21	68	16	71	37	4	21	36	1.74
736186--736282	36	2.7	36	93	0	158	41	4	19	35	1.71
736219--736253	15	2.3	15	90	0	52	40	5	22	31	1.78
736522--736578	29	2.0	28	83	10	71	50	0	1	47	1.11
736624--736681	23	2.5	23	80	0	62	46	1	1	50	1.22
736695--736830	28	4.8	28	76	13	111	49	0	0	49	1.11
740511--740593	29	2.7	31	78	14	100	50	9	10	28	1.69
741042--741071	15	2.0	15	93	0	51	36	0	0	63	0.95
741143--741195	24	2.2	24	83	6	72	37	1	0	60	1.08
741150--741194	23	1.9	24	90	4	74	37	2	0	60	1.09
741415--741453	20	2.0	20	85	5	53	43	2	0	53	1.14
746051--746105	27	2.0	27	100	0	110	14	29	25	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
747196--747255	28	2.1	28	90	0	93	31	6	40	21	1.79
752833--752873	20	2.0	21	85	4	57	68	4	0	26	1.10
755224--755266	23	2.0	21	90	9	68	65	0	4	30	1.13
763296--763436	47	3.0	47	95	0	246	36	12	15	34	1.86
766306--766358	26	2.0	26	92	0	88	18	24	24	32	1.97
768393--768476	27	2.9	29	80	10	100	58	4	15	21	1.56
776660--776722	31	2.1	31	85	8	85	33	28	19	19	1.96
776672--776766	31	3.0	31	86	4	111	34	24	18	22	1.96
777063--777168	2	53.5	2	98	1	205	50	50	0	0	1.00
781357--781447	31	2.9	31	75	3	92	36	24	17	21	1.95
783490--783538	14	3.2	14	74	20	53	26	16	22	34	1.95
785157--785224	23	3.0	23	84	0	91	17	25	25	32	1.97
786605--788872	749	3.0	749	98	0	4351	27	17	20	35	1.94
788848--788931	36	2.3	36	89	0	132	21	16	27	34	1.95
795659--795689	3	10.7	3	93	6	55	64	0	0	35	0.94
795659--795692	17	2.0	17	100	0	68	64	0	0	35	0.94
795659--795686	14	2.0	14	100	0	56	64	0	0	35	0.94
795969--796192	53	4.4	53	82	4	237	30	16	22	31	1.95
797609--797666	19	3.1	19	94	0	107	29	10	18	41	1.84
801396--801428	16	2.0	17	94	5	59	60	6	9	24	1.49
805512--805540	9	3.2	9	100	0	58	44	0	0	55	0.99
805777--805830	27	2.0	27	85	10	74	48	1	0	50	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
805766--805859	24	3.8	23	73	20	66	41	3	0	55	1.16
806028--806083	2	29.5	2	77	16	57	46	0	1	51	1.11
805998--806073	29	2.6	29	85	4	89	44	2	2	50	1.30
807005--807152	72	2.1	72	96	0	269	29	13	12	44	1.80
807515--807554	16	2.5	16	87	0	53	45	10	5	40	1.60
809914--809970	21	2.7	21	100	0	114	40	28	10	21	1.86
811390--811448	23	2.6	23	94	0	100	27	27	25	20	1.99
812466--812510	21	2.1	21	87	0	63	15	24	28	31	1.96
814321--814374	24	2.2	24	81	12	58	38	3	33	24	1.73
816182--816268	24	3.4	24	78	17	102	34	4	34	26	1.77

Tables:   1   2   3   4   5   6   7   8